Publications by authors named "S P Pimentel"

Background: This split-mouth, double-masked, randomized clinical trial aimed at evaluating the impact of different macro geometries and nano topographical modifications on peri-implant bone repair in smokers.

Methods: Thirty-two patients who smoked at least ten cigarettes/day, with the need of a single maxillary or mandibular implant bilaterally, received two implants randomly assigned to DA - Dual Acid-Etched implants (n = 32); HCAN - healing chambers and activated nano surface (n = 32). Implant stability quotient (ISQ) was evaluated 07, 30, 60, 90, and 120 days after implant placement.

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Sequencing RNAs that are biologically processed or degraded to less than ~100 nucleotides typically involves multi-step, low-yield protocols with bias and information loss inherent to ligation and/or polynucleotide tailing. We recently introduced Ordered Two-Template Relay (OTTR), a method that captures obligatorily end-to-end sequences of input molecules and, in the same reverse transcription step, also appends 5' and 3' sequencing adapters of choice. OTTR has been thoroughly benchmarked for optimal production of microRNA, tRNA and tRNA fragments, and ribosome-protected mRNA footprint libraries.

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Article Synopsis
  • The Ordered Two-Template Relay (OTTR) method captures complete RNA sequences and appends sequencing adapters in a single reverse transcription step, aiming to improve data yield and reduce bias in sequencing short RNAs.
  • Researchers optimized various factors such as reaction buffers, reverse transcriptase sequences, and adapter oligonucleotides to enhance precision in capturing RNA sequences and minimizing overall library bias.
  • The updated OTTR protocol also reduces bacterial contamination in sequencing results and includes a rapid, automated process for efficiently enriching cDNA without unwanted byproducts.
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  • Urinary tract infections (UTIs) and urinary tract colonizations (UTCs) are prevalent in patients with spinal cord injury (SCI), prompting a study to analyze the microbial profiles and antibiotic resistance found in urine cultures of these patients.
  • The study reviewed 235 urine culture results from 29 SCI patients over eight years, finding that UTIs occurred in 57% of samples while UTCs were identified in 43%.
  • Most identified bacteria were resistant to fluoroquinolones but showed low resistance to cephalosporins and very low resistance to nitrofurantoin, highlighting the importance of tailoring antibiotic treatments based on specific culture results.
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Observational studies of treatment effects require adjustment for confounding variables. However, causal inference methods typically cannot deliver perfect adjustment on all measured baseline variables, and there is often ambiguity about which variables should be prioritized. Standard prioritization methods based on treatment imbalance alone neglect variables' relationships with the outcome.

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