Same-Slide Spatial Multi-Omics Integration Reveals Tumor Virus-Linked Spatial Reorganization of the Tumor Microenvironment.

The advent of spatial transcriptomics and spatial proteomics have enabled profound insights into tissue organization to provide systems-level understanding of diseases. Both technologies currently remain largely independent, and emerging same slide spatial multi-omics approaches are generally limited in plex, spatial resolution, and analytical approaches. We introduce IN-situ DEtailed Phenotyping To High-resolution transcriptomics (IN-DEPTH), a streamlined and resource-effective approach compatible with various spatial platforms.

Viral oncogene EBNALP regulates YY1 DNA binding and alters host 3D genome organization.

The Epstein-Barr virus (EBV) nuclear antigen leader protein (EBNALP) is essential for the immortalization of naive B lymphocytes (NBLs). However, the mechanisms remain elusive. To understand EBNALP's role in B-cell transformation, we compare NBLs infected with wild-type EBV and an EBNALP-null mutant EBV using multi-omics techniques.

New Ecological Observations and Occurrence for Asteroidea and Echinoidea in Hong Kong.

This paper reports several new occurrences for Asteroidea and Echinoidea in Hong Kong. New records for asteroids include Anseropoda rosacea, Aquilonastra cepheus, Pentaceraster alveolatus, Pentaceraster sibogae, and Culcita novaeguineae. For echinoids, new records include Coelopleurus maculatus, Eucidaris metularia, Prionocidaris baculosa, Echinostrephus molaris, Pseudoboletia indiana, Salmacis bicolor, Stomopneustes variolaris, Toxopneustes pileolus, Clypeaster reticulatus, Metalia spatagus, and Nacospatangus altus.

Automatic identification of clinically important species by artificial intelligence-based image recognition: proof-of-concept study.

While morphological examination is the most widely used for identification in clinical laboratories, PCR-sequencing and MALDI-TOF MS are emerging technologies in more financially-competent laboratories. However, mycological expertise, molecular biologists and/or expensive equipment are needed for these. Recently, artificial intelligence (AI), especially image recognition, is being increasingly employed in medicine for fast and automated disease diagnosis.

Coral colony abundances and sizes as indicators of reef health in subtropical Hong Kong waters.

Previous studies of the coral communities in Hong Kong focused on the characterisation of benthic cover, with little attention given to colony size structure. We conducted transect surveys at 52 sites across a gradient of water quality, identified 6774 coral colonies to 23 genera and measured the size of each colony. The southern waters harboured less diverse (1-9 genera) and fewer corals (2-28 colonies) than the eastern waters (3-16 genera and 17-427 colonies) per site.