Publications by authors named "S E Gribkova"

Article Synopsis
  • EWSR1-FLI1 is a chimeric oncogene that drives the transformation of cells in Ewing sarcoma (EwS), but its role in transcriptional heterogeneity is not well understood.
  • Researchers used single-cell RNA sequencing and time-resolved analysis to explore the dynamic processes linked to EWSR1-FLI1, identifying a specific enhancer-driven program related to this oncogene.
  • The study found that varying levels of EWSR1-FLI1 activity correlate with cell proliferation and metabolic states, revealing intratumoral heterogeneity tied to oxygen levels in different EwS cell populations.
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The original PDF version of this Article contained errors in two equations. In Eq. (1), all Γ symbols were inadvertently omitted.

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Single-cell RNA-sequencing (scRNA-seq) is a powerful high-throughput technique that enables researchers to measure genome-wide transcription levels at the resolution of single cells. Because of the low amount of RNA present in a single cell, some genes may fail to be detected even though they are expressed; these genes are usually referred to as dropouts. Here, we present a general and flexible zero-inflated negative binomial model (ZINB-WaVE), which leads to low-dimensional representations of the data that account for zero inflation (dropouts), over-dispersion, and the count nature of the data.

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We present the microrheological study of the two close human epithelial cell lines: non-cancerous HCV29 and cancerous T24. The optical tweezers tracking was applied to extract the several seconds long trajectories of endogenous lipid granules at time step of 1μs. They were analyzed using a recently proposed equation for mean square displacement (MSD) in the case of subdiffusion influenced by an optical trap.

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Monoclonal antimorphine antibodies both free and conjugated with horse- radish peroxidase have been raised and used to develop an assay kit for the detection of narcotic opiate-based drugs by an immuno-enzyme assay (IEA). The kit contains all ingredients necessary for the enzymatic reaction. A total of 215 urine and blood samples were analysed using the new kit.

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