Publications by authors named "Ryo Tamura"

Computational approaches using theoretical calculations and data scientific methods have become increasingly important in materials science and technology, with the development of relevant methodologies and algorithms, the availability of large materials data, and the enhancement of computer performance. As reviewed herein, we have developed computational methods for the design and prediction of inorganic materials with a particular focus on the exploration of semiconductors and dielectrics. High-throughput first-principles calculations are used to systematically and accurately predict the local atomic and electronic structures of polarons, point defects, surfaces, and interfaces, as well as bulk fundamental properties.

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Obtaining a fine approximation of a black-box function is important for understanding and evaluating innovative materials. Active learning aims to improve the approximation of black-box functions with fewer training data. In this study, we investigate whether active learning based on uncertainty sampling enables the efficient approximation of black-box functions in regression tasks using various material databases.

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  • The study uses Bayesian optimization (BO), a machine learning technique, to enhance the growth conditions for monolayer WS, focusing on photoluminescence (PL) intensity as the key metric.
  • After 13 rounds of optimization, there was a notable improvement of 86.6% in PL intensity.
  • The research demonstrates BO's superiority over random search in finding optimal conditions more efficiently and underscores the role of ML in speeding up material synthesis and development of two-dimensional technologies.
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  • * In experiments with mice, pemafibrate reduced peritoneal fibrosis and inflammation, restoring membrane function and promoting anti-inflammatory responses.
  • * The drug acts by inhibiting key inflammatory pathways and stabilizing proteins that prevent inflammation, suggesting its effectiveness as a therapy for peritoneal fibrosis in humans.
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Background: Posterior sagittal anorectoplasty and laparoscopic-assisted anorectal pull-through are preferred for anorectal malformation (ARM) today, while careful pull-through procedures with sacroperineal approach yield excellent outcomes. This study focuses on a pull-through procedure emphasizing continence mechanism preservation and compares outcomes with historical studies with various procedures.

Methods: Bowel function of patients with intermediate ARM followed up for over 10 years post-surgically was assessed.

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Polyamines are abundant and physiologically essential biomolecules that play a role in numerous processes, but are disrupted in diseases such as cancer, and cardiovascular and neurological disorders. Despite their importance, measuring free polyamine concentrations and monitoring their metabolism and uptake in cells in real-time remains impossible due to the lack of appropriate biosensors. Here we engineered, characterized, and validated the first genetically encoded biosensors for polyamines, named iPASnFRs.

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  • Machine learning is crucial for predicting mechanical properties of polymer materials, which is essential for designing advanced polymers.
  • The study introduces a method that utilizes X-ray diffraction (XRD) to analyze higher-order structures of polymers, improving the prediction of their mechanical properties.
  • By using Bayesian spectral deconvolution and black-box optimization through Ising machines, the research successfully achieves accurate predictions of seven mechanical properties in polymers, including composite variants.
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Introduction: In 2021, the LEOPARD trial reported that the combination of lenvatinib+one-shot cisplatin infusion might contribute to improving the results of conventional advanced hepatocellular carcinoma (HCC) treatment. Thus, combination therapy with lenvatinib and catheterization has emerged as a focal point in treating advanced HCC. Conversely, the New FP regimen consists of low-dose cisplatin (CDDP) combined with 5-fluorouracil (5-FU) and lipiodol via hepatic arterial infusion chemotherapy (HAIC), with a high response rate of approximately 70%.

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  • Ovarian clear cell carcinoma (OCCC) is a tough-to-treat gynecological cancer that shows resistance to chemotherapy, with its underlying mechanisms not fully understood.
  • Recent research combined single-cell analyses and spatial transcriptomics on surgical specimens to identify a resistant subpopulation of OCCC associated with high HIF activity found near cancer-associated fibroblasts (CAFs).
  • The study revealed that the growth factor PDGF contributes to this chemoresistance, and using the drug ripretinib can target CAFs, enhancing the effectiveness of conventional chemotherapy like carboplatin against OCCC.
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Silica exhibits a rich phase diagram with numerous stable structures existing at different temperature and pressure conditions, including its glassy form. In large-scale atomistic simulations, due to the small energy difference, several phases may coexist. While, in terms of long-range order, there are clear differences between these phases, their short- or medium-range structural properties are similar for many phases, thus making it difficult to detect the structural differences.

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  • Lynch syndrome-linked endometrial cancer can involve multiple tumors in different locations, impacting treatment approaches.*
  • A 27-year-old woman with such tumors was diagnosed with endometrial cancer and had family history suggesting Lynch syndrome, confirmed by genetic testing showing MLH1 mutations.*
  • Analysis of her tumors indicated a common clonal origin and genetic variations, highlighting the need for comprehensive evaluation in patients with synchronous tumors associated with Lynch syndrome.*
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Introduction: Breath analysis using a chemical sensor array combined with machine learning algorithms may be applicable for detecting and screening lung cancer. In this study, we examined whether perioperative breath analysis can predict the presence of lung cancer using a Membrane-type Surface stress Sensor (MSS) array and machine learning.

Methods: Patients who underwent lung cancer surgery at an academic medical center, Japan, between November 2018 and November 2019 were included.

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This report presents a case of an intramuscular lipoma observed in the left back of a healthy female toddler. It was resected after 3 months of observation because of rapid enlargement, raising suspicion of malignancy. Histopathological examination confirmed a diagnosis of intramuscular lipoma without malignant and blastemal components.

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Objective: To determine the current prognosis of endometrial carcinoma in Japan by analyzing long-term trends in endometrial carcinoma at our hospital.

Methods: We divided 1463 patients with endometrial carcinoma who visited our hospital between 1984 and 2022 into group 1984-1991, group 1992-1999, group 2000-2006, group 2007-2014 and group 2015-2022. Trends were determined using the Jonckheere-Terpstra and Cochran-Armitage tests.

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Ovarian squamous cell carcinoma (SCC) is rare, and most cases arise from ovarian teratomas. Herein, we present a case of ovarian SCC arising from an ovarian seromucinous borderline tumor (SMBT) with squamous overgrowth. A 71-year-old woman an underwent emergency laparotomy due to the rupture of a right ovarian tumor suspected to be a borderline or malignant tumor.

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A drastically efficient method for identifying electrocatalysts with desirable functionality is a pressing necessity for making a breakthrough in advanced water-electrolyzers toward large-scale green hydrogen production and addressing the significant challenge of carbon neutrality. Despite extensive investigations over the last several centuries, it remains a time-consuming task to identify even one promising affordable electrocatalyst without platinum-group-metal (PGM) for one electrochemical reaction due to its great complexities, particularly for the key anode reaction in the water-electrolyzer of the oxygen evolution reaction (OER). In this study, we demonstrate that a human-machine collaboration based on stepwise-evolving artificial intelligence (se-AI) can significantly shorten the development period of PGM-free multimetal OER electrocatalysts with performance beyond a PGM of RuO.

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Tracheal agenesis (TA) is a rare congenital anomaly with an incidence of 1 per 50,000 newborns. It appears at birth with severe respiratory distress, cyanosis, and inaudible crying. Prompt esophageal intubation and long-term management of the esophageal airway are essential to overcome this catastrophic condition.

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The efficient treatment of polymer waste is a major challenge for marine sustainability. It is useful to reveal the factors that dominate the degradability of polymer materials for developing polymer materials in the future. The small number of available datasets on degradability and the diversity of their experimental means and conditions hinder large-scale analysis.

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  • Endometriosis is linked to a higher risk of certain types of ovarian cancer, but its connection to endometrial cancer is not clear; this study investigates that link.
  • Researchers analyzed medical records of 720 women with endometrial cancer, focusing on 101 with endometriosis and 619 without it, revealing that those with endometriosis were generally younger and had fewer pregnancies and deliveries.
  • Notably, women with endometrial cancer and endometriosis were more often diagnosed at an earlier stage and had a higher rate of concurrent ovarian cancer, highlighting a significant clinical relationship.
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  • The study aimed to evaluate the effectiveness of the Pipelle endometrial biopsy in diagnosing ovarian, fallopian tube, and peritoneal cancers, areas where its utility had not been previously assessed.
  • A total of 90 patients with these cancers underwent the biopsy, and the results were analyzed for sensitivity, false-negative rates, and impact on treatment decisions.
  • The findings showed that the biopsy had low sensitivity (27.8% overall) and was more effective in advanced disease stages, highlighting its potential to aid in early diagnoses and guide treatment for patients.
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The response of cells to environmental stimuli, under either physiological or pathological conditions, plays a key role in determining cell fate toward either adaptive survival or controlled death. The efficiency of such a feedback mechanism is closely related to the most challenging human diseases, including cancer. Since cellular responses are implemented through physical forces exerted on intracellular components, more detailed knowledge of force distribution through modern imaging techniques is needed to ensure a mechanistic understanding of these forces.

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Density functional theory (DFT) is a significant computational tool that has substantially influenced chemistry, physics, and materials science. DFT necessitates parametrized approximation for determining an expected value. Hence, to predict the properties of a given molecule using DFT, appropriate parameters of the functional should be set for each molecule.

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BRCA1/2 mutations are robust biomarkers for platinum-based chemotherapy in epithelial ovarian cancers. However, BRCA1/2 mutations in clear cell ovarian carcinoma (CCC) are less frequent compared with high-grade serous ovarian cancer (HGSC). The discovery of biomarkers that can be applied to CCC is an unmet need in chemotherapy.

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The atomic descriptors used in machine learning to predict forces are often high dimensional. In general, by retrieving a significant amount of structural information from these descriptors, accurate force predictions can be achieved. On the other hand, to acquire higher robustness for transferability without overfitting, sufficient reduction of descriptors should be necessary.

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Background: The junction between the peristaltic and non-peristaltic bowel, which is named the "shore break" (SB), observed on endoscopy is thought to be the boundary between normal and abnormal motility in Hirschsprung's disease (HD). The transition zone (TZ), which is the histopathological border, does not have normal motility and should be resected. This study aimed to evaluate the histopathological findings of the SB and determine the association between the SB and TZ.

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