Publications by authors named "Ryan Allen"

Otitis media is the most frequently diagnosed disease and a leading cause of hearing loss in young children. However, genetic contributors to susceptibility and pathogen-host-environment interactions in otitis media remain to be identified. Such knowledge would help identify at-risk individuals and effectively monitor, diagnose, and treat patients with otitis media.

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Phosphatic concretions in terrestrial settings are often identified as coprolites based upon their biotic contents and high phosphorus levels. However, recent discoveries have shown that non-fecal origins of fossiliferous phosphatic concretions are more common than originally recognized. Confusion about the taphonomic origin of phosphatic concretions can lead to erroneous paleobiological and paleoenvironmental interpretations, so a set of criteria would be useful to evaluate whether a phosphatic concretion is a coprolite.

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Sarcopenia, or age-related muscle dysfunction, contributes to morbidity and mortality. Besides decreases in muscle force, sarcopenia is associated with atrophy and fast-to-slow fiber type switching, which is typically secondary to denervation in humans and rodents. However, very little is known about cellular changes preceding these important (mal)adaptations.

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The tympanic membrane (TM) forms an impenetrable barrier to medical therapies for middle ear (ME) diseases like otitis media. By screening a phage-displayed peptide library, we have previously discovered rare peptides that mediate the active transport of cargo across the intact membrane of animals and humans. Since the M13 filamentous bacteriophage on which the peptides are expressed are large (nearly 1 µm in length), this offers the possibility of noninvasively delivering drugs, large drug packages, or gene therapy to the ME.

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The tympanic membrane forms an impenetrable barrier between the ear canal and the air-filled middle ear, protecting it from fluid, pathogens, and foreign material entry. We previously screened a phage display library and discovered peptides that mediate transport across the intact membrane. The route by which transport occurs is not certain, but possibilities include paracellular transport through loosened intercellular junctions and transcellular transport through the cells that comprise the various tympanic membrane layers.

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Article Synopsis
  • Activating transcription factor 6 (Atf6) is crucial for managing the unfolded protein response (UPR) and maintaining proper endoplasmic reticulum function, with loss of ATF6 linked to vision issues like achromatopsia.
  • Some patients with ATF6 mutations also experience progressive sensorineural hearing loss, which was mirrored in Atf6-/- mice showing auditory deficits and structural damage in their cochleae.
  • The research highlights the role of ATF6 in cochlear health and suggests that ER stress is a critical factor in hearing loss, indicating the need for adjustments in patient lifestyles to reduce ear-related stressors.
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Background:  Experiential learning through simulation allows students to apply didactic knowledge to real-world situations. Tabletop simulation allows for the exploration of a variety of topics, including cybersecurity in health care. Due to its low frequency, yet high-risk nature, simulation is a perfect educational modality to practice responding to a cybersecurity attack.

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is a major nosocomial pathogen that persists in healthcare settings despite rigorous disinfection protocols due to intrinsic mechanisms conferring resistance. We sought to systematically assess cationic biocide efficacy against this pathogen using a panel of multidrug-resistant clinical isolates. Our studies revealed widespread resistance to commercial cationic disinfectants that are the current standard of care, raising concerns about their efficacy.

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  • Several drugs can harm cochlear hair cells, leading to hearing loss, and while some treatments have shown promise in animal models, they often fail to translate effectively to humans due to complex cellular damage mechanisms.
  • The study tested various combinations of compounds aimed at different cellular damage processes in hair cells affected by gentamicin, a drug known to cause damage, to find the most protective combinations.
  • Results demonstrated that combinations of two to four protective compounds improved hair cell survival, with the most effective combination including an antioxidant, an apoptosis inhibitor, an autophagy inhibitor, and a protective growth factor, while using too many compounds decreased the protective effect.
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  • * Researchers created a mouse model lacking the nuclear localization signal for TyrRS, leading to decreased lean and fat mass, improved insulin sensitivity, and normal blood sugar levels, pointing to a metabolic role for TyrRS.
  • * YARS1 deficiency in mice also resulted in progressive hearing loss, highlighting the importance of TyrRS in fat storage, metabolism, and overall health, emphasizing the connection between protein synthesis and metabolic regulation.
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  • Chronic Otitis Media (COM) is a long-term ear infection caused by bacteria due to issues with the eardrum and often involves antibiotic resistance.
  • Research evaluated the natural drug 1,8-Cineol as an off-label treatment for COM, showing it reduced harmful bacteria and led to better health outcomes in some patients.
  • This study highlights the anti-inflammatory benefits of 1,8-Cineol, suggesting potential improvements in treatment options for COM with further investigation into how it works.
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Background: More frequent and intense wildfires will increase concentrations of smoke in schools and childcare settings. Low-cost sensors can assess fine particulate matter (PM) concentrations with high spatial and temporal resolution.

Objective: We sought to optimize the use of sensors for decision-making in schools and childcare settings during wildfire smoke to reduce children's exposure to PM.

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Housing affordability is a growing challenge for households in the United States and other developed countries. Prolonged exposure to housing cost burden can have damaging effects on households, and, in particular, children. These burdens can exacerbate parental stress, reduce investments in children and expose households to greater neighborhood disadvantage.

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Emerging evidence suggests that the COVID-19 pandemic has extracted a substantial toll on immigrant communities in the United States, due in part to increased potential risk of exposure for immigrants to COVID-19 in the workplace. In this article, we use federal guidance on which industries in the United States were designated essential during the COVID-19 pandemic, information about the ability to work remotely, and data from the 2019 American Community Survey to estimate the distribution of essential frontline workers by nativity and immigrant legal status. Central to our analysis is a proxy measure of working in the primary or secondary sector of the segmented labor market.

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The delivery of CRISPR ribonucleoproteins (RNPs) for genome editing in vitro and in vivo has important advantages over other delivery methods, including reduced off-target and immunogenic effects. However, effective delivery of RNPs remains challenging in certain cell types due to low efficiency and cell toxicity. To address these issues, we engineer self-deliverable RNPs that can promote efficient cellular uptake and carry out robust genome editing without the need for helper materials or biomolecules.

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The high potential of siRNAs to silence oncogenic drivers remains largely untapped due to the challenges of tumor cell delivery. Here, divalent lipid-conjugated siRNAs are optimized for in situ binding to albumin to improve pharmacokinetics and tumor delivery. Systematic variation of the siRNA conjugate structure reveals that the location of the linker branching site dictates tendency toward albumin association versus self-assembly, while the lipid hydrophobicity and reversibility of albumin binding also contribute to siRNA intracellular delivery.

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Tinnitus is a heritable, highly prevalent auditory disorder treated by multiple medical specialties. Previous GWAS indicated high genetic correlations between tinnitus and hearing loss, with little indication of differentiating signals. We present a GWAS meta-analysis, triple previous sample sizes, and expand to non-European ancestries.

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Hypothesis: The middle ear (ME) epithelium transforms because of changed immunomodulation during infection.

Introduction: The epithelial cells of the tympanic cavity represent the first line of defense in the context of otitis media. They can convert from a typical mucosal site into a respiratory epithelium and vice versa.

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Article Synopsis
  • The objective of the review was to summarize advancements in otitis media (OM) research from 2019 to 2023, focusing on aspects like immunology, inflammation, environmental impacts, and host-pathogen interactions.
  • Data was gathered from the PubMed database, with literature reviewed by panel members before discussions at a symposium in June 2023.
  • Key findings include new insights on susceptibility to OM due to environmental factors, genetic links, immune system roles, and innovative research areas such as bacterial adaptations and gene expression related to OM.
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The delivery of CRISPR ribonucleoproteins (RNPs) for genome editing and has important advantages over other delivery methods, including reduced off-target and immunogenic effects . However, effective delivery of RNPs remains challenging in certain cell types due to low efficiency and cell toxicity. To address these issues, we engineered self-deliverable RNPs that can promote efficient cellular uptake and carry out robust genome editing without the need for helper materials or biomolecules.

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Introduction: Next-generation DNA sequencing (NGS) technologies have increased the sensitivity for detecting the bacterial presence and have been used in other areas of orthopaedics to better understand the native microbiome of various joints. This study uses NGS to determine whether (1) a unique microbiome exists in human ankle tissues, (2) if components of the ankle microbiome affect patient outcomes, and (3) whether microbes found on the skin are a normal part of the ankle microbiome.

Methods: A prospective study recruited 32 patients undergoing total ankle arthroplasty (n = 23) or ankle arthrodesis (n = 9) via direct anterior approach between November 2020 and October 2021.

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Low-cost, long-term measures of air pollution concentrations are often needed for epidemiological studies and policy analyses of household air pollution. The Washington passive sampler (WPS), an ultra-low-cost method for measuring the long-term average levels of light-absorbing carbon (LAC) air pollution, uses digital images to measure the changes in the reflectance of a passively exposed paper filter. A prior publication on WPS reported high precision and reproducibility.

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In the search for novel quaternary ammonium compound (QAC) disinfectants that can evade bacterial resistance, we turned to natural products as a source of inspiration. Herein we used natural product ianthelliformisamine C as a scaffold to design a small library of QACs. We first synthesized ianthelliformisamine C via an amide coupling that allowed for facile purification without the need for protecting groups.

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