General relationship of local topologies, global dynamics, and bifurcation in cellular networks.

Cellular networks realize their functions by integrating intricate information embedded within local structures such as regulatory paths and feedback loops. However, the precise mechanisms of how local topologies determine global network dynamics and induce bifurcations remain unidentified. A critical step in unraveling the integration is to identify the governing principles, which underlie the mechanisms of information flow.

Pseudo-trajectory inference for identifying essential regulations and molecules in cell fate decisions.

Cell fate decision is crucial in biological development and plays fundamental roles in normal development and functional maintenance of organisms. By identifying key regulatory interactions and molecules involved in these fate decisions, we can shed light on the intricate mechanisms underlying the cell fates. This understanding ultimately reveals the fundamental principles driving biological development and the origins of various diseases.

Effects of probiotic supplementation on 12 min run performance, mood management, body composition and gut microbiota in amateur marathon runners: A double-blind controlled trial.

Background: Probiotic supplementation has a positive effect on endurance exercise performance and body composition in athletes, but the underlying mechanisms remain unclear. Gut microbiota can provide measurable markers of immune function in athletes, and microbial composition analysis may be sensitive enough to detect stress and metabolic disorders caused by exercise.

Methods: Nineteen healthy active amateur marathon runners (15 male and 4 female) with a mean age of 29.

Coherent detection of the rotational Doppler effect measurement based on triple Fourier transform.

In recent years, the rotational Doppler effect (RDE) has been widely used in rotational motion measurement. However, the performance of existing detection systems based on the RDE are generally limited by the drastic reduction of signal-to-noise ratio (SNR) due to the influence of atmospheric turbulence, partial obscuration of the vortex beam (VB) during propagation, and misalignment between the optical axis of VB and the rotational axis of the object, which poses a challenge for practical applications. In this paper, we proposed a coherent detection method of the RDE measurement based on triple Fourier transform.

Simultaneous measurement of spin and precession based on light's orbital angular momentum.

The rotational Doppler effect of the vortex beam is a recently emerged promising application of the optical vortex with orbital angular momentum. In this paper, we combine the method of the micro-Doppler effect of the traditional radar and the rotational Doppler effect of the vortex beam and propose an approach of rotational micro-Doppler effect, realizing the simultaneous measurement of spin and precession. We firstly analyze the rotational micro-Doppler characteristic introduced by precession under the illuminating of vortex beam and calculate the rotational micro-Doppler parameters related to the spin and precession.

Analysis of rotational Doppler shift with multi-ring vortex beams.

Vortex beams (VBs) with orbital angular momentum have shown great potential in the detection of transverse rotational motion of spatial targets which is undetectable in the classical radar scheme. However, most of the reported rotational Doppler measurements based on VBs can only be realized under ideal experimental conditions. The long-range detection is still a challenge.

Constructing maps between distinct cell fates and parametric conditions by systematic perturbations.

Motivation: Cell fate transitions are common in many developmental processes. Therefore, identifying the mechanisms behind them is crucial. Traditionally, due to complexity of networks and existence of plenty of kinetic parameters, dynamical analysis of biomolecular networks can only be performed by simultaneously perturbing a small number of parameters.

Matrix stability and bifurcation analysis by a network-based approach.

In this paper, we develop a network-based methodology to investigate the problems related to matrix stability and bifurcations in nonlinear dynamical systems. By matching a matrix with a network, i.e.

Identifying key factors in cell fate decisions by machine learning interpretable strategies.

Cell fate decisions and transitions are common in almost all developmental processes. Therefore, it is important to identify the decision-making mechanisms and important individual molecules behind the fate decision processes. In this paper, we propose an interpretable strategy based on systematic perturbation, unsupervised hierarchical cluster analysis (HCA), machine learning (ML), and Shapley additive explanation (SHAP) analysis for inferring the contribution and importance of individual molecules in cell fate decision and transition processes.

Rotating axis measurement based on rotational Doppler effect of spliced superposed optical vortex.

In most rotational Doppler effect (RDE) measurements, the optical axis and the rotating axis of the object are required to be aligned. However, the condition is very difficult to achieve in practical applications of rotation detection, which seriously affects the received signal. Moreover, it is necessary to focus the beam on the rotating axis of a rotating surface in applications ranging from manufacturing to physical experiments.

A Co-Expressed Natural Antisense RNA -AS Controls IgE-Dependent Immunity by Promoting Expression of FcεRIα.

As the α-subunit of the high-affinity receptor for the Fc portion of immunoglobulin E (FcεRIα), FcεRIα plays a central role in IgE-mediated allergic disorders and in the immunity and immunopathology of some parasitic infections. FcεRIα is specifically expressed on basophils and mast cells, but the mechanism that controls FcεRIα expression in these cells is poorly understood. In this study, we found that the natural antisense transcript (NAT) of FcεRIα (-AS) is co-expressed with the sense transcript (-S) in both interleukin (IL)-3-induced FcεRIα-expressing cells and in the high FcεRIα-expressing cell line MC/9.

A neglected pathway for the accretion products formation in the atmosphere.

Highly oxygenated organic molecules (HOM) formed by the autoxidation of α-pinene initiated by OH radicals play an important role in new particle formation. It is believed that the accretion products, ROOR´, formed by the self- and cross-reaction of peroxy radicals (RO + R'O reactions), have extremely low volatility and are more likely to participate in nucleation. However, the mechanism of ROOR´ formation has not been fully demonstrated by experiment or theoretical calculation.

Hsa_circ_0010957 knockdown attenuates lipopolysaccharide-induced HK2 cell injury by regulating the miR-1224-5p/IRAK1 axis.

Circular RNAs (circRNAs) are involved in the progression of various diseases, including lupus nephritis. Hsa_circ_0010957 is reported to be dysregulated in lupus nephritis, but the exact function of this circRNA is unknown. This research aims to study the function and mechanism of circRNA hsa_circ_0010957 in a lipopolysaccharide (LPS)-induced cellular model of lupus nephritis.

Effects of oestrogen on vulvovaginal candidosis.

As a frequently occurring infectious disease mainly caused by Candida albicans, vulvovaginal candidosis (VVC) affects more than 100 million women worldwide every year. Multiple factors that influence C. albicans colonisation have been linked to the incidence of VVC, including high levels of circulating oestrogen due to pregnancy, the use of oral contraceptives, and hormone replacement therapy.

Interleukin-4- and NACHT, LRR and PYD domains-containing protein 3-independent mechanisms of alum enhanced T helper type 2 responses on basophils.

Aluminium hydroxide (alum), the most widely used adjuvant in human and animal vaccines, has long been known to promote T helper type 2 (Th2) responses and Th2-associated humoral responses, but the mechanisms have remained poorly understood. In this study, we explored whether alum is able to directly modulate antigen-presenting cells to enhance their potency for Th2 polarization. We found that alum treatment of dendritic cells failed to show any Th2-promoting activities.