Publications by authors named "Runze Ouyang"

Pancreatic ductal adenocarcinoma (PDAC) is a highly malignant disease with a poor prognosis due to inefficient diagnosis and tenacious drug resistance. Obg-like ATPase 1 (OLA1) is overexpressed in many malignant tumors. The molecular mechanism of OLA1 underlying gemcitabine (GEM)-induced drug resistance was investigated in this study.

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Article Synopsis
  • Gut microbiota plays a crucial role in various physiological processes by producing bioactive molecules, but existing analytical methods for detecting these metabolites are limited.
  • This study proposes a new method using a pentafluorophenyl column in liquid chromatography-high-resolution mass spectrometry (LC-HRMS) to analyze gut microbiota-related metabolites effectively, showing high sensitivity and stability.
  • A comprehensive database was created to include 968 known and 282 sample-specific metabolites, leading to the annotation of 672 metabolites from mouse samples, significantly improving the understanding of microbe-host interactions.
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The healthy growth of infants during early life is associated with lifelong consequences. Breastfeeding has positive impacts on reducing obesity risk, which is likely due to the varied components of breast milk, such as N-acetylneuraminic acid (Neu5Ac). However, the effect of breast milk Neu5Ac on infant growth has not been well studied.

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The gut microbiota is involved in the production of numerous metabolites that maintain host wellbeing. The assembly of the gut microbiome is highly dynamic, and influenced by many postnatal factors, moreover, little is known about the development of the gut metabolome. We showed that geography has an important influence on the microbiome dynamics in the first year of life based on two independent cohorts from China and Sweden.

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The complex microbiota and sialylated oligosaccharides in breastmilk are important bioactive components that affect the gut microbiota. However, the effect of breastmilk microbiota and sialylated oligosaccharides on the gut microbiota during the neonatal period has been largely overlooked. Here, 16S rRNA gene sequencing and metabolomics analysis were applied to the breastmilk and feces of 69 newborns to clarify the link between breastmilk components and the newborn gut.

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Liquid chromatography-high-resolution mass spectrometry (LC-HRMS) is the most popular platform for untargeted metabolomics studies, but compound annotation is a challenge. In this work, we developed a new LC-HRMS data-targeted extraction method called MetEx for metabolite annotation. MetEx contains the retention time (), MS1, and MS2 information of 30 620 metabolites from freely available spectral databases, including MoNA and KEGG.

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Background: Effects of polybrominated diphenyl ethers (PBDEs) on neonatal birth outcomes vary across previous studies, and the related mechanism investigation remains poorly understood, especially at the metabolic level.

Objectives: To evaluate the associations between prenatal PBDEs exposure and neonatal birth outcomes including gestational age, neonatal weight, birth length, head circumference (HC), Apgar score at 1 min (Apgar1) and 5 min, and further reveal the underlying metabolic disorders in a population-based birth cohort study.

Methods: Gas chromatography-triple quadrupole tandem mass spectrometry (GC-MS/MS) based targeted method and GC-MS based untargeted method were respectively conducted to obtain PBDE levels and metabolic profiles of 200 placental tissue samples from a typical e-waste recycling area (Guiyu) and reference area (Haojiang) in China.

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Because the integrase of class 1 integron in bacteria has been demonstrated closely relative with antimicrobial resistance, we summarize in this review the discussions on some regulation factors with expression of the integrase, such as antibiotics, carbon catabolite repression (cAMP-CRP complex), the promoter of gene cassette variants (Pc-P2 combinations), attC sites, some nucleotide-associated proteins, and the length of variable region. Furthermore, we also provide knowledge of the regulation mechanism of integrase, as well as insight into controlling the dissemination of antimicrobial resistance in the environments.

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