GPMeta: a GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.

Metagenomic sequencing (mNGS) is a powerful diagnostic tool to detect causative pathogens in clinical microbiological testing owing to its unbiasedness and substantially reduced costs. Rapid and accurate classification of metagenomic sequences is a critical procedure for pathogen identification in dry-lab step of mNGS test. However, clinical practices of the testing technology are hampered by the challenge of classifying sequences within a clinically relevant timeframe.

FRMC: a fast and robust method for the imputation of scRNA-seq data.

The high-resolution feature of single-cell transcriptome sequencing technology allows researchers to observe cellular gene expression profiles at the single-cell level, offering numerous possibilities for subsequent biomedical investigation. However, the unavoidable technical impact of high missing values in the gene-cell expression matrices generated by insufficient RNA input severely hampers the accuracy of downstream analysis. To address this problem, it is essential to develop a more rapid and stable imputation method with greater accuracy, which should not only be able to recover the missing data, but also effectively facilitate the following biological mechanism analysis.

A Comparison for Dimensionality Reduction Methods of Single-Cell RNA-seq Data.

Single-cell RNA sequencing (scRNA-seq) is a high-throughput sequencing technology performed at the level of an individual cell, which can have a potential to understand cellular heterogeneity. However, scRNA-seq data are high-dimensional, noisy, and sparse data. Dimension reduction is an important step in downstream analysis of scRNA-seq.

Ag nanoparticles decorated urchin-like cobalt carbonate hydroxide composites for highly efficient oxygen evolution reaction.

Herein, a novel composite of small amounts of Ag nanoparticles (NPs) decorated urchin-like cobalt carbonate hydroxide hydrate (CCHH) was developed for highly-efficient alkaline oxygen evolution reaction (OER). Not only can Ag colloids, as template agents, modify the morphologies of urchin-like CCHH microspheres to expose more active sites available, but also the supported Ag NPs formed by Ag colloids can transfer the electron to CCHH surfaces, accelerating the transformation of surface Co to Co/Co (proton-coupled electron transfer (PCET) process). The urchin-like Ag/CCHH (0.