Publications by authors named "Ruichao Li"

Article Synopsis
  • The study examines the presence of tigecycline resistant Enterobacterales (TRE) in the gut of healthy birds and in meat samples, revealing a significant prevalence in poultry.
  • Out of 960 samples, 19.21% from chicken farms and 13.3% from turkey farms tested positive for TRE, with specific strains of E. coli identified carrying the tet(X4) gene, indicating multi-drug resistance.
  • Findings suggest that food-producing animals could be a source of TRE for humans, highlighting the need for active surveillance to mitigate public health risks related to these resistant bacteria.
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Precipitation distribution during the growing season and interannual precipitation variation may have significant impacts on grassland ecosystem productivity at the site level. To explore the effect of the distribution of precipitation on plant communities in the Inner Mongolian desert steppe dominated by Stipa breviflora, we analyzed monthly precipitation patterns during the growing season (May-October) over the past 60 years (1961-2020) and identified four major precipitation distribution patterns. These included the concentrated precipitation during July (TΛ7), August (TΛ8), and during the early and late growth stages.

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Objectives: Tigecycline, a last-resort antibiotic in the tetracycline class, has been effective in treating infections caused by multidrug-resistant bacteria. However, the emergence of the tigecycline resistance gene cluster tmexCD-toprJ, which encodes a resistance-nodulation-division efflux pump, has significantly limited its therapeutic effectiveness. This study aims to explore the potential of CRISPR/Cas9-based plasmids to target and cleave tmexCD-toprJ gene cluster from bacterial plasmids and chromosomal integrative conjugative elements (ICEs), respectively.

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The plasmid-mediated conjugative transfer of antibiotic resistance genes (ARGs) stands out as the primary driver behind the dissemination of antimicrobial resistance (AMR). Developing effective inhibitors that target conjugative transfer represents an potential strategy for addressing the issue of AMR. Here, we studied the effect of acetylshikonin (ASK), a botanical derivative, on plasmid conjugation.

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Article Synopsis
  • This study focuses on the prevalence and transferability of two tigecycline resistance genes (tet(X) and tmexCD-toprJ) in flies, which are key carriers of antimicrobial resistance.
  • A total of 52 bacterial isolates were collected, with 76.9% testing positive for tet(X) and 23.1% for tmexCD-toprJ, showing a higher prevalence of tet(X) in rural areas compared to urban areas.
  • The research highlights that many of these resistant strains are multi-drug resistant and provides insights into the genetic mechanisms behind this resistance, which could help in developing strategies to combat antimicrobial resistance.
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  • Clostridium perfringens is a foodborne pathogen that causes intestinal diseases in humans and animals, especially affecting infants and young children due to its variety of toxins, including the newly identified BEC toxin.
  • Recent studies identified two strains of C. perfringens carrying becAB genes in China, indicating that these strains can spread across different regions through a specific plasmid.
  • This research highlights the need for continued surveillance of becAB-carrying strains due to their potential health impact and the importance of monitoring their antimicrobial resistance.
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  • Tumor growth involves complex biological processes, and using only one type of treatment (monotherapy) often leads to issues like drug resistance and limited effectiveness.
  • To improve cancer treatment, a combined approach (multitherapy) that incorporates both chemotherapy and oligonucleotide drugs is necessary.
  • Researchers have created advanced multidrug nanoparticles using modified red blood cell membranes to enhance the delivery and effectiveness of targeted treatments for HER2-positive breast cancer, showing promising results.
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This study conducted a four-month monitoring of carbapenem resistance in a broiler breeding farm in China. A total of 185 carbapenem-resistant bacterial isolates were obtained from 2298 cloacal swabs from broiler breeders and their offspring within a production cycle. The detection rate of carbapenem-resistant isolates was higher during the brooding period.

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  • The study looks at how dissolved organic carbon (DOC) moves from land to rivers and oceans, which is important for understanding the global carbon cycle.
  • Researchers ran simulations to see how natural things like climate change and human activities affect DOC levels over 40 years (1981-2016).
  • They found that DOC transport has significantly increased, with climate change playing a big role in this rise, showing how human activities and changes in the environment impact the carbon cycle.
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  • A gene known as (X4) has been found in certain bacteria, showing a strong resistance to the antibiotic tigecycline (TGC), which is raising global alarm about antibiotic resistance.
  • Researchers studied a specific strain of this resistant bacteria, ST469 serovar Rissen (Rissen), isolated from pork in China, using various testing methods like antimicrobial susceptibility and whole-genome sequencing.
  • The study found that the (X4) gene is plasmid-mediated and can be shared among different bacterial strains, indicating a potential increase in the spread of TGC resistance beyond its current limits, highlighting the need for ongoing surveillance.
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  • Coal-burning fluorosis is caused by long-term exposure to high-fluoride coal used for heating and cooking, which affects the PPARGC1A gene and its expression levels.
  • The study found specific genetic variations (genotypes) at several loci, such as rs13131226 and rs1873532, that significantly increase the risk of developing coal-burning and skeletal fluorosis.
  • Increased methylation in the mitochondrial DNA D-loop region is linked to a higher risk of coal-burning fluorosis, highlighting the interaction between genetic factors and environmental exposure in the Guizhou population.
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Article Synopsis
  • - A study conducted in Shanghai from 2019-2022 found two types of plasmid-mediated antibiotic resistance in food samples, specifically in ready-to-eat foods and chicken.
  • - The plasmids identified (pEC1918-mcr10 and pEC2001-mcr10) are linked to high-level resistance to polymyxin B, an important antibiotic.
  • - The report emphasizes the need for ongoing monitoring of antibiotic resistance genes in the food supply to prevent public health risks.
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  • The article talks about how engines that use ammonia and hydrogen can produce a gas called NO, which is bad for the environment.
  • It says scientists are studying how NO forms in special catalysts used in these engines, and they found that the size and shape of the catalysts can affect how much NO is made.
  • This research helps us understand how to reduce NO emissions, making it easier to keep these engines clean and carbon-free.
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  • China has significant ethnic diversity, making whole genome variation data essential for population genetics and precision medicine, yet research on ethnic minority genomes is limited.
  • The Guizhou Multi-ethnic Genome Database (GMGD) provides whole genome sequencing data from 476 individuals across 11 ethnic minority groups in Guizhou Province, featuring over 16 million variants, including many novel ones not found in existing databases.
  • GMGD allows researchers to explore genetic variations with tools for mutation searches and a genotype-imputation function, making it the largest and most diverse genome-wide database available for these ethnic groups, accessible online.
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Article Synopsis
  • The tmexCD-toprJ gene cluster is responsible for multidrug resistance, especially affecting antibiotics like tigecycline, but its origins and spread were previously unclear.* -
  • Through an analysis of over 73,000 bacterial genomes and metagenomic datasets, researchers found that tmexCD-toprJ primarily originates from Pseudomonas aeruginosa in human hosts, particularly in Asia and North America.* -
  • The study suggests that tmexCD-toprJ evolved from a specific clone of P. aeruginosa and shows that a mobile genetic structure aids in its transmission to other bacterial species.*
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C. perfringens type D strains are the leading cause of enterotoxaemia in ruminants such as goats, sheep, and cattle. However, there has been no prior research on the genomic characteristics of C.

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The emergence of plasmid-mediated tigecycline resistance gene tet(X4) among clinically relevant bacteria has promoted significant concerns, as tigecycline is considered a last-resort drug against serious infections caused by multidrug-resistant bacteria. We herein focused on the isolation and molecular characterization of tet(X4)-positive Klebsiella pneumoniae (K. pneumoniae) and Escherichia coli (E.

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Background: Carbapenem-resistant Escherichia coli (CREC) has been considered as WHO priority pathogens, causing a great public health concern globally. While CREC from patients has been thoroughly investigated, the prevalence and underlying risks of CREC in healthy populations have been overlooked. Systematic research on the prevalence of CREC in healthy individuals was conducted here.

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  • Carbapenem-resistant hypervirulent Klebsiella pneumoniae (CR-HvKP) strains are a significant public health threat due to their combination of virulence and multidrug resistance, prompting this study to explore their evolutionary characteristics.* -
  • The researchers used various methods like antimicrobial susceptibility testing, plasmid profiling, and whole genome sequencing to analyze the genetic features of resistance and virulence plasmids in two clinical CRKP isolates, identifying novel hybrid virulence plasmids.* -
  • The study concluded that there's a co-evolution of virulence and resistance plasmids in CRKP isolates, emphasizing the need for close monitoring of these hybrid plasmids in clinical settings to better combat infections.*
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Carbapenem-resistant Klebsiella aerogenes (CRKA), being one of the members of carbapenem-resistant Enterobacteriaceae (CRE), has caused great public health concern, but with fewer studies compared to other CRE members. Furthermore, studies on phylogenetic analysis based on whole genome Single-Nucleotide Polymorphism (SNP) of CRKA were limited. Here, 20 CRKA isolates (11 bla-bearing and 9 bla-harboring) were characterized by antimicrobial susceptibility testing, conjugation assay, whole genome sequencing (WGS) and bioinformatics analysis.

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Large cointegrate plasmids recruit genetic features of their parental plasmids and serve as important vectors in the spread of antibiotic resistance. They are now frequently found in clinical settings, raising the issue of how to limit their further transmission. Here, we conducted evolutionary research of a large blaNDM-positive cointegrate within Escherichia coli C600, and discovered that adaptive evolution of chromosome and plasmid jointly improved bacterial fitness, which was manifested as enhanced survival ability for in vivo and in vitro pairwise competition, biofilm formation, and gut colonization ability.

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Background: The presence of plasmid-mediated resistance-nodulation-division (RND) efflux pump gene cluster tmexCD1-toprJ1 and its related variants has been associated with heightened resistance to tigecycline, thus diminishing its effectiveness. In this study, we explored the potential of gramine, a naturally occurring indole alkaloid, as an innovative adjuvant to enhance the treatment of infections caused by K. pneumoniae carrying tmexCD-toprJ-like gene clusters.

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