Publications by authors named "Rongfeng Gao"

Article Synopsis
  • The rise in computer power and biological data has made bioinformatics essential for solving biological issues, particularly in drug discovery and biomedical research.
  • This paper classifies protein function prediction methods into three main types: sequence-based, structure-based, and interaction networks-based.
  • It analyzes recent advancements in these algorithms, offering insights and references for applying bioinformatics in protein function prediction.
View Article and Find Full Text PDF

Background: Activated sludge (AS) systems in wastewater treatment plants (WWTPs) harbor enormous viruses that regulate microbial metabolism and nutrient cycling, significantly influencing the stability of AS systems. However, our knowledge about the diversity of viral taxonomic groups and functional traits in global AS systems is still limited. To address this gap, we investigated the global diversity and biogeography of DNA viral communities in AS systems using 85,114 viral operational taxonomic units (vOTUs) recovered from 144 AS samples collected across 54 WWTPs from 13 different countries.

View Article and Find Full Text PDF

The rise of global temperature causes the degradation of the substantial reserves of carbon (C) stored in tundra soils, in which microbial processes play critical roles. Viruses are known to influence the soil C cycle by encoding auxiliary metabolic genes and infecting key microorganisms, but their regulation of microbial communities under climate warming remains unexplored. In this study, we evaluated the responses of viral communities for about 5 years of experimental warming at two depths (15 to 25 cm and 45 to 55 cm) in the Alaskan permafrost region.

View Article and Find Full Text PDF

Background: Induced by the pathogen , tuberculosis remains one of the most dangerous infectious diseases in the world. As a special virus, prophage is domesticated by its host and are major contributors to virulence factors for bacterial pathogenicity. The function of prophages and their genes in is still unknown.

View Article and Find Full Text PDF