An integrated multi-source dataset of elasmobranchs in the Red Sea following the Red Sea Decade Expedition.

Red Sea elasmobranch populations are facing alarming declines. Effective conservation efforts require management strategies informed by extensive datasets and by developing an understanding of distribution patterns within the basin, which is currently lacking. This study introduces CERSE (Central and Eastern Red Sea Elasmobranchs), a comprehensive compilation of elasmobranch observations in the central and eastern Red Sea basin following the route of the Red Sea Decade Expedition.

Density and distribution patterns of seafloor macrolitter in the eastern Red Sea.

The constant production of plastic and incessant growth of waste pollution continues to alter the marine environment from the coasts and surface waters to the deep sea. The quantification and investigation of macrolitter on the vast seabed of the ocean are challenging tasks that must be undertaken to elucidate the impact of anthropogenic activity on the marine environment and facilitate subsequent implementation of legally binding waste management regulations. In this study, we analyzed >60,000 images collected during 84 dives surveying 62.

A review of loiasis and its vectors in Gabon.

Loiasis colloquially known as tropical eye worm is a neglected tropical helminthic disease that affects the rural poor population of Gabon. A systematic review of 51 documents (45 peer reviewed papers and six dissertations) over four decades has documented many knowledge gaps on loiasis and its vectors. Higher prevalence and high microfilaremia is typical wherever Chrysops vectors occur.

Active prokaryotic and eukaryotic viral ecology across spatial scale in a deep-sea brine pool.

Deep-sea brine pools represent rare, extreme environments, providing unique insight into the limits of life on Earth, and by analogy, the plausibility of life beyond it. A distinguishing feature of many brine pools is presence of thick microbial mats that develop at the brine-seawater interface. While these bacterial and archaeal communities have received moderate attention, viruses and their host interactions in these environments remain underexplored.

Molecular diversity of black corals from the Saudi Arabian Red Sea: a first assessment.

Black corals occur as part of benthic assemblages from shallow to deep waters in all oceans. Despite the importance in many benthic ecosystems, where these act as biodiversity aggregators, antipatharians remain poorly studied, with 75% of the known species occurring below recreational SCUBA diving depth limits. Currently, information regarding the diversity and evolutionary history is limited, with most studies focusing on Hawaii and the South Pacific Ocean.

Use of cell-free signals as biomarkers for early and easy prediction of preeclampsia.

Introduction: Preeclampsia (PE) is a leading cause of maternal and perinatal morbidity worldwide. However, current methods of screening are complicated and require special skill sets. In this observational study of prospectively collected samples, we wanted to evaluate if cell-free () DNA could be an efficient biomarker for identification of at-risk patients.

Patient attitudes and preferences about expanded noninvasive prenatal testing.

Noninvasive prenatal testing (NIPT) using cell-free DNA (cfDNA) is typically carried out to screen for common fetal chromosomal anomalies, with the option to screen for a wider range of chromosomal changes (expanded NIPT) becoming increasingly available. However, little is known about pregnant patients' attitudes and preferences regarding expanded NIPT. To address this gap, we surveyed general-risk patients having first-tier cfDNA screening at a private prenatal clinic on their expectations for expanded NIPT.

A new species of (Cnidaria, Anthozoa, Antipatharia, Schizopathidae) from the Red Sea and its phylogenetic position.

A black coral, Chimienti, is described from the Saudi Arabian coasts of the Gulf of Aqaba and north Red Sea (Neom area) using an integrated taxonomic approach. The morphological distinctiveness of the new species is confirmed by molecular analyses. The species thrives in warm and high salinity waters typical of the Red Sea at bathyal depths.

First record of Boulenger's anthias Sacura boulengeri (Heemstra 1973) in the Red Sea.

In November 2020, we observed several individuals and collected one juvenile of an unidentified anthiadine fish (Serranidae) between depths of 250 and 307 m near vertical walls of rocky reefs in the northern Red Sea. Further morphological and molecular analyses revealed that the collected specimen matches Sacura boulengeri, a species previously reported only from the Gulf of Oman to India.

A multi-method characterization of Elasmobranch & Cheloniidae communities of the north-eastern Red Sea and Gulf of Aqaba.

The Red Sea is particularly biodiverse, hosting high levels of endemism and numerous populations whose extinction risk is heightened by their relative isolation. Elasmobranchs and sea turtles have likely suffered recent declines in this region, although data on their distribution and biology are severely lacking, especially on the eastern side of the basin in Saudi Arabian waters. Here, we present sightings of elasmobranchs and sea turtles across the north-eastern Red Sea and Gulf of Aqaba collected through a combination of survey methods.

The complete mitochondrial genome of (Cnidaria: Scleractinia) from the NEOM region of the Northern Red Sea.

The scleractinian coral family Dendrophylliidae is a major component of shallow and deep-water coral ecosystems worldwide, but our knowledge on the evolutionary history of the family remains scarce. Here, we used ezRAD coupled with Illumina sequencing technology and reconstructed the complete mitochondrial genome of (GenBank accession number OL634845), from mesophotic depths in the Red Sea NEOM area. The mitochondrial genome of consisted of 19,054 bp, organized in 13 protein-coding genes, 2 rRNA genes, and 2 tRNA genes, in agreement with the Scleractinia typical mitogenome organization.

CDK1-Mediated Phosphorylation of BAG3 Promotes Mitotic Cell Shape Remodeling and the Molecular Assembly of Mitotic p62 Bodies.

The cochaperone BCL2-associated athanogene 3 (BAG3), in complex with the heat shock protein HSPB8, facilitates mitotic rounding, spindle orientation, and proper abscission of daughter cells. BAG3 and HSPB8 mitotic functions implicate the sequestosome p62/SQSTM1, suggesting a role for protein quality control. However, the interplay between this chaperone-assisted pathway and the mitotic machinery is not known.

Early and specific targeted mass spectrometry-based identification of bacteria in endotracheal aspirates of patients suspected with ventilator-associated pneumonia.

Rapid and reliable pathogen identification is compulsory to confirm ventilator-associated pneumonia (VAP) in order to initiate appropriate antibiotic treatment. In the present proof of concept, the effectiveness of rapid microorganism identification with a targeted bottom-up proteomics approach was investigated in endotracheal aspirate (ETA) samples of VAP patients. To do so, a prototype selected-reaction monitoring (SRM)-based assay was developed on a triple quadrupole mass spectrometer tracking proteotypic peptide surrogates of bacterial proteomes.

The adenoviral protein E4orf4: a probing tool to decipher mechanical stress-induced nuclear envelope remodeling in tumor cells.

The human adenovirus (Ad) type 2/5 early region 4 (E4) ORF4 protein (E4orf4) exerts a remarkable tumor cell-selective killing activity in mammalian cells. This indicates that E4orf4 can target tumor cell-defining features and is a unique tool to probe cancer cell vulnerabilities. Recently, we found that E4orf4, through an interaction with the polarity protein PAR3, subverts nuclear envelope (NE) remodeling processes in a tumor cell-selective manner.

Biodegradation of MC252 polycyclic aromatic hydrocarbons and alkanes in two coastal wetlands.

Complementary microbial and geochemical assessment techniques investigated the biodegradation of PAHs and alkanes in salt marshes impacted by crude oil following the Macondo spill. Contamination was observed in the top 10 cm of the marsh profile based on PAH analysis and measurement of the δC signature of impacted marsh soils. Measurement of evolution of C depleted CO indicated mineralization of crude oil ranging from 2.

Adenoviral protein E4orf4 interacts with the polarity protein Par3 to induce nuclear rupture and tumor cell death.

The tumor cell-selective killing activity of the adenovirus type 2 early region 4 ORF4 (E4orf4) protein is poorly defined at the molecular level. Here, we show that the tumoricidal effect of E4orf4 is typified by changes in nuclear dynamics that depend on its interaction with the polarity protein Par3 and actomyosin contractility. Mechanistically, E4orf4 induced a high incidence of nuclear bleb formation and repetitive nuclear ruptures, which promoted nuclear efflux of E4orf4 and loss of nuclear integrity.

Biogeochemical controls on biodegradation of buried oil along a coastal headland beach.

Laboratory experiments investigated oxygen dynamics in buried oiled sands sampled from areas impacted by the Macondo spill. Measured oxygen fluxes in oil deposits that were permeable to tidal water ranged from 10 to 10 μmol/cm-sec, orders of magnitude higher than fluxes in non-permeable deposits (10 to 10 μmol/cm-sec). Oxygen dynamics were well described by 1-d models that represent increased oxygen consumption in oiled sands.

The value of transcriptomics in advancing knowledge of the immune response and diagnosis in tuberculosis.

Blood transcriptomics analysis of tuberculosis has revealed an interferon-inducible gene signature that diminishes in expression after successful treatment; this promises improved diagnostics and treatment monitoring, which are essential for the eradication of tuberculosis. Sensitive radiography revealing lung abnormalities and blood transcriptomics have demonstrated heterogeneity in patients with active tuberculosis and exposed asymptomatic people with latent tuberculosis, suggestive of a continuum of infection and immune states. Here we describe the immune response to infection with Mycobacterium tuberculosis revealed through the use of transcriptomics, as well as differences among clinical phenotypes of infection that might provide information on temporal changes in host immunity associated with evolving infection.

A modular transcriptional signature identifies phenotypic heterogeneity of human tuberculosis infection.

Whole blood transcriptional signatures distinguishing active tuberculosis patients from asymptomatic latently infected individuals exist. Consensus has not been achieved regarding the optimal reduced gene sets as diagnostic biomarkers that also achieve discrimination from other diseases. Here we show a blood transcriptional signature of active tuberculosis using RNA-Seq, confirming microarray results, that discriminates active tuberculosis from latently infected and healthy individuals, validating this signature in an independent cohort.

Transport of crude oil and associated microbial populations by washover events on coastal headland beaches.

Storm-driven transport of MC252 oil, sand and shell aggregates was studied on a low-relief coastal headland beach in Louisiana, USA including measurement of alkylated PAHs and Illumina sequencing of intra-aggregate microbial populations. Weathering ratios, constructed from alkylated PAH data, were used to assess loss of 3-ring phenanthrenes and dibenzothiophenes relative to 4-ring chrysenes. Specific aggregate types showed relatively little weathering of 3-ring PAHs referenced to oil sampled near the Macondo wellhead with the exception of certain SRBs sampled from the supratidal environment and samples from deposition areas north of beach.

HSPB8 and BAG3 cooperate to promote spatial sequestration of ubiquitinated proteins and coordinate the cellular adaptive response to proteasome insufficiency.

BCL2-associated athanogene (BAG)-3 is viewed as a platform that would physically and functionally link distinct classes of molecular chaperones of the heat shock protein (HSP) family for the stabilization and clearance of damaged proteins. In this study, we show that HSPB8, a member of the small heat shock protein subfamily, cooperates with BAG3 to coordinate the sequestration of harmful proteins and the cellular adaptive response upon proteasome inhibition. Silencing of HSPB8, like depletion of BAG3, inhibited targeting of ubiquitinated proteins to the juxtanuclear aggresome, a mammalian system of spatial quality control.

Knowledge Translation Strategy to Reduce the Use of Potentially Inappropriate Medications in Hospitalized Elderly Adults.

Objectives: To evaluate the effect of a knowledge translation (KT) strategy to reduce potentially inappropriate medication (PIM) use in hospitalized elderly adults.

Design: Segmented regression analysis of an interrupted time series.

Setting: Teaching hospital.