Copper Guanidinoquinoline Complexes as Entatic State Models of Electron-Transfer Proteins.

The electron-transfer abilities of the copper guanidinoquinoline (GUAqu) complexes [Cu(TMGqu) ] and [Cu(DMEGqu) ] (TMGqu=tetramethylguanidinoquinoline, DMEGqu=dimethylethylguanidinoquinoline) were examined in different solvents. The determination of the electron self-exchange rate based on the Marcus theory reveals the highest electron-transfer rate of copper complexes with pure N-donor ligands (k =1.2×10  s  m in propionitrile).

Multi-level meta-workflows: new concept for regularly occurring tasks in quantum chemistry.

Background: In Quantum Chemistry, many tasks are reoccurring frequently, e.g. geometry optimizations, benchmarking series etc.

Portals and Web-Based Resources for Virtual Screening.

Virtual screening for active compounds has become an essential step within the drug development pipeline. The computer based prediction of compound binding modes is one of the most time and cost efficient methods for screening ligand libraries and enrich results of potential drugs. Here we present an overview about currently available online resources regarding compound databases, docking applications, and science gateways for drug discovery and virtual screening, in order to help structural biologists in choosing the best tools for their analysis.

Insights into the influence of dispersion correction in the theoretical treatment of guanidine-quinoline copper(I) complexes.

For the description of steric effects, dispersion correction is important in density functional theory. By investigation of sterically encumbered guanidine-quinoline copper bis(chelate) complexes, we could show that the correct description requires modern dispersion correction using Becke-Johnson (BJ) damping and that earlier dispersion corrections are not sufficient. The triple-zeta basis set def2-TZVP of the Ahlrichs series is balanced and converged for the structural description.

Performance studies on distributed virtual screening.

Virtual high-throughput screening (vHTS) is an invaluable method in modern drug discovery. It permits screening large datasets or databases of chemical structures for those structures binding possibly to a drug target. Virtual screening is typically performed by docking code, which often runs sequentially.

The MoSGrid Science Gateway - A Complete Solution for Molecular Simulations.

The MoSGrid portal offers an approach to carry out high-quality molecular simulations on distributed compute infrastructures to scientists with all kinds of background and experience levels. A user-friendly Web interface guarantees the ease-of-use of modern chemical simulation applications well established in the field. The usage of well-defined workflows annotated with metadata largely improves the reproducibility of simulations in the sense of good lab practice.

Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway.

The new science gateway MoSGrid (Molecular Simulation Grid) enables users to submit and process molecular simulation studies on a large scale. A conformational analysis of guanidine zinc complexes, which are active catalysts in the ring-opening polymerization of lactide, is presented as an example. Such a large-scale quantum chemical study is enabled by workflow technologies.