Interactive Exploration and Visualization Using MetaTracts extracted from Carbon Fiber Reinforced Composites.

This work introduces a tool for interactive exploration and visualization using MetaTracts. MetaTracts is a novel method for extraction and visualization of individual fiber bundles and weaving patterns from X-ray computed tomography (XCT) scans of endless carbon fiber reinforced polymers (CFRPs). It is designed specifically to handle XCT scans of low resolutions where the individual fibers are barely visible, which makes extraction of fiber bundles a challenging problem.

Exploring Flow Fields Using Space-Filling Analysis of Streamlines.

Large scale scientific simulations frequently use streamline based techniques to visualize flow fields. As the shape of a streamline is often related to some underlying property of the field, it is important to identify streamlines (or their parts) with unique geometric features. In this paper, we introduce a metric, called the box counting ratio, which measures the geometric complexity of streamlines by measuring their space-filling capacity at different scales.

On the fractal dimension of isosurfaces.

A (3D) scalar grid is a regular n1 x n2 x n3 grid of vertices where each vertex v is associated with some scalar value sv. Applying trilinear interpolation, the scalar grid determines a scalar function g where g(v) = sv for each grid vertex v. An isosurface with isovalue σ is a triangular mesh which approximates the level set g(-1)(σ).

Restriction landmark genomic scanning (RLGS) spot identification by second generation virtual RLGS in multiple genomes with multiple enzyme combinations.

Background: Restriction landmark genomic scanning (RLGS) is one of the most successfully applied methods for the identification of aberrant CpG island hypermethylation in cancer, as well as the identification of tissue specific methylation of CpG islands. However, a limitation to the utility of this method has been the ability to assign specific genomic sequences to RLGS spots, a process commonly referred to as "RLGS spot cloning."

Results: We report the development of a virtual RLGS method (vRLGS) that allows for RLGS spot identification in any sequenced genome and with any enzyme combination.

Contour area filtering of two-dimensional electrophoresis images.

We describe an algorithm, Contour Area Filtering, for separating background from foreground in gray scale images. The algorithm is based on the area contained within gray scale contour lines. It can be viewed as a form of local thresholding, or as a seed growing algorithm, or as a type of watershed segmentation.

Isosurface construction in any dimension using Convex Hulls.

We present an algorithm for constructing isosurfaces in any dimension. The input to the algorithm is a set of scalar values in a d-dimensional regular grid of (topological) hypercubes. The output is a set of (d-1)-dimensional simplices forming a piecewise linear approximation to the isosurface.