Publications by authors named "Rengin Ozgur"

Salinization is a significant global issue causes irreversible damage to plants by reducing osmotic potential, inhibiting seed germination, and impeding water uptake. Seed germination, a crucial step towards the seedling stage is regulated by several hormones and genes, with the balance between abscisic acid and gibberellin being the key mechanism that either promotes or inhibits this process. Additionally, mucilage, a gelatinous substance, is known to provide protection against drought, herbivory, soil adhesion, and seed sinking.

View Article and Find Full Text PDF
Article Synopsis
  • Heavy metal exposure (Fe, Zn, Cu, As) in Arabidopsis thaliana seedlings led to significant growth reduction (50-70%) and increased unfolded protein accumulation in the endoplasmic reticulum (ER), indicating ER stress.
  • Zn, Cu, and As specifically induced the unfolded protein response (UPR) genes, with Zn triggering bZIP28 expression, while Fe did not elicit a similar response.
  • The results highlight that heavy metals not only affect growth but also disrupt protein folding and ER function in plants, enhancing our understanding of how metal toxicity impacts plant health.
View Article and Find Full Text PDF

Electron flow through the electron transport chain (ETC) is essential for oxidative phosphorylation in mitochondria and photosynthesis in chloroplasts. Electron fluxes depend on environmental parameters, e.g.

View Article and Find Full Text PDF
Article Synopsis
  • Abiotic and biotic stress in plants produce reactive carbonyl species (RCS), like 4-hydroxy-(E)-2-nonenal (HNE) and acrolein, which can be toxic at high levels.
  • The chapter explores how RCS affect plant signaling and metabolism, emphasizing the need for more research on their roles compared to the well-studied effects in animals.
  • It also highlights the impact of climate change on abiotic stress and RCS metabolism, along with methods for measuring RCS in plants to further investigate their significance.
View Article and Find Full Text PDF
Article Synopsis
  • - Schrenkiella parvula, a halophyte thriving near Lake Tuz in Turkey, can tolerate high salinity levels, germinating and growing at 100 mM NaCl but struggling at concentrations above 200 mM.
  • - The study revealed that while S. parvula shows enhanced root elongation under moderate salt, it has reduced root hair density and meristem size, with auxin levels being a key factor in root development under salt stress.
  • - In contrast, Arabidopsis thaliana germinates well at lower salt levels but experiences inhibited root growth when exposed to salinity, highlighting S. parvula’s superior adaptation to salt compared to A. thaliana.
View Article and Find Full Text PDF

Single cell C (SCC) plants, discovered around two decades ago, are promising materials for efforts for genetic engineering of C photosynthesis into C crops. Unlike C plants with Kranz anatomy, they exhibit a fully functional C photosynthesis in just a single cell and do not require mesophyll and bundle sheath cell spatial separation. is one such SCC plant, with NAD-malic enzyme (NAD-ME) subtype C photosynthesis.

View Article and Find Full Text PDF

The present work aimed to compare antioxidant response and lipid peroxide detoxification capacity of an arctic-alpine species Arabis alpina to its close relative model species Arabidopsis thaliana under acute short duration (3 h and 6 h) UV-B stress (4.6 and 8.2 W/m).

View Article and Find Full Text PDF

Melatonin plays an active role in neutralizing free radicals, especially by triggering the defense system and certain enzymes that work under stress in both mammals and plant systems. Exposure to ultraviolet (UV-B) stress can be deadly for plants since UV-B can induce production of reactive oxygen species and damage nucleic acids. In the present study, to uncover the possible alleviative role of melatonin against UV-B stress, Arabidopsis thaliana plants were treated with melatonin (10 μM) and were exposed to UV-B stress for 90 min and 180 min (46 and 92 kJ m d).

View Article and Find Full Text PDF

The endoplasmic reticulum (ER) is the main site of secretory protein production and folding and its homeostasis under environmental stress is vital for the maintenance of the protein secretory pathway. The loss of homeostasis and accumulation of unfolded proteins in the ER is referred to as ER stress. Although, γ-aminobutyric acid (GABA) is an important regulator of stress response in plants, its roles during ER stress remains unclear.

View Article and Find Full Text PDF

Iron deficiency chlorosis (IDC) is an abiotic stress often experienced by soybean, owing to the low solubility of iron in alkaline soils. Here, soybean lines with contrasting Fe efficiencies were analyzed to test the hypothesis that the Fe efficiency trait is linked to antioxidative stress signaling via proper management of tissue Fe accumulation and transport, which in turn influences the regulation of heme and non heme containing enzymes involved in Fe uptake and ROS scavenging. Inefficient plants displayed higher oxidative stress and lower ferric reductase activity, whereas root and leaf catalase activity were nine-fold and three-fold higher, respectively.

View Article and Find Full Text PDF

Redox regulation, antioxidant defence, and reactive oxygen species (ROS) signalling are critical in performing and tuning metabolic activities. However, our concepts have mostly been developed for C3 plants since Arabidopsis thaliana has been the major model for research. Efforts to convert C3 plants to C4 to increase yield (such as IRRI's C4 Rice Project) entail a better understanding of these processes in C4 plants.

View Article and Find Full Text PDF

Secretory proteins undergo modifications such as glycosylation and disulphide bond formation before proper folding, and move to their final destination via the endomembrane system. Accumulation of unfolded proteins in the endoplasmic reticulum (ER) due to suboptimal environmental conditions triggers a response called the unfolded protein response (UPR), which induces a set of genes that elevate protein folding capacity in the ER. This review aims to establish a connection among ER stress, UPR, and reactive oxygen species (ROS), which remains an unexplored topic in plants.

View Article and Find Full Text PDF

Stress conditions generate an extra load on protein folding machinery in the endoplasmic reticulum (ER) and if the ER cannot overcome this load, unfolded proteins accumulate in the ER lumen, causing ER stress. ER lumen localised protein disulfide isomerase (PDI) catalyses the generation of disulfide bonds in conjugation with ER oxidoreductase1 (ERO1) during protein folding. Mismatched disulfide bonds are reduced by the conversion of GSH to GSSG.

View Article and Find Full Text PDF

Bienertia sinuspersici performs single cell C photosynthesis without Kranz anatomy. Peripheral and central cytoplasmic compartments in a single chlorenchyma cell act as mesophyll cells and bundle sheath cells. Development of this specialized mechanism is gradual during plant development.

View Article and Find Full Text PDF

Water deficit (drought stress) massively restricts plant growth and the yield of crops; reducing the deleterious effects of drought is therefore of high agricultural relevance. Drought triggers diverse cellular processes including the inhibition of photosynthesis, the accumulation of cell-damaging reactive oxygen species and gene expression reprogramming, besides others. Transcription factors (TF) are central regulators of transcriptional reprogramming and expression of many TF genes is affected by drought, including members of the NAC family.

View Article and Find Full Text PDF

The worst case scenario of global climate change predicts both drought and salinity would be the first environmental factors restricting agriculture and natural ecosystems, causing decreased crop yields and plant growth that would directly affect human population in the next decades. Therefore, it is vital to understand the biology of plants that are already adapted to these extreme conditions. In this sense, extremophiles such as the halophytes offer valuable genetic information for understanding plant salinity tolerance and to improve the stress tolerance of crop plants.

View Article and Find Full Text PDF

Background And Aims: Accumulation of unfolded proteins caused by inefficient chaperone activity in the endoplasmic reticulum (ER) is termed 'ER stress', and it is perceived by a complex gene network. Induction of these genes triggers a response termed the 'unfolded protein response' (UPR). If a cell cannot overcome the accumulation of unfolded proteins, the ER-associated degradation (ERAD) system is induced to degrade those proteins.

View Article and Find Full Text PDF

A 2,158 bp cDNA (PyBPO1) encoding a bromoperoxidase (BPO) of 625 amino acids was isolated from Pyropia yezoensis. Phylogenetic analysis using amino acid sequences of BPOs suggested that P. yezoensis and cyanobacteria were grouped in the same clade and separated from brown algae.

View Article and Find Full Text PDF

Background And Aims: Eutrema parvulum (synonym, Thellungiella parvula) is an extreme halophyte that thrives in high salt concentrations (100-150 mm) and is closely related to Arabidopsis thaliana. The main aim of this study was to determine how E. parvulum uses reactive oxygen species (ROS) production, antioxidant systems and redox regulation of the electron transport system in chloroplasts to tolerate salinity.

View Article and Find Full Text PDF

Inefficient chaperone activity in endoplasmic reticulum (ER) causes accumulation of unfolded proteins and is called ER stress, which triggers the unfolded protein response. For proper oxidative protein folding, reactive oxygen species (ROS) such as H2O2 are produced in the ER. Although the role of ROS during abiotic stresses such as salinity is well documented, the role of ER-related ROS production and its signalling is not yet known.

View Article and Find Full Text PDF

In the present study, we aimed to elucidate how strategies of reactive oxygen species (ROS) regulation and the antioxidant defense system changed during transition from C₃ to C₄ photosynthesis, by using the model genus Flaveria, which contains species belonging to different steps in C₄ evolution. For this reason, four Flaveria species that have different carboxylation mechanisms, Flaveria robusta (C₃), Flaveria anomala (C₃-C₄), Flaveria brownii (C₄-like) and Flaveria bidentis (C₄), were used. Physiological (growth, relative water content (RWC), osmotic potential), and photosynthetical parameters (stomatal conductance (g(s)), assimilation rate (A), electron transport rate (ETR)), antioxidant defense enzymes (superoxide dismutase (SOD), catalase (CAT), peroxidase (POX), ascorbate peroxidase (APX), glutathione reductases(GR)) and their isoenzymes, non-enzymatic antioxidant contents (ascorbate, glutathione), NADPH oxidase (NOX) activity, hydrogen peroxide (H₂O₂) content and lipid peroxidation levels (TBARS) were measured comparatively under polyethylene glycol (PEG 6000) induced osmotic stress.

View Article and Find Full Text PDF

Production of reactive oxygen species (ROS), which are a by-product of normal cell metabolism in living organisms, is an inevitable consequence of aerobic life on Earth, and halophytes are no exception to this rule. The accumulation of ROS is elevated under different stress conditions, including salinity, due to a serious imbalance between their production and elimination. These ROS are highly toxic and, in the absence of protective mechanisms, can cause oxidative damage to lipids, proteins and DNA, leading to alterations in the redox state and further damage to the cell.

View Article and Find Full Text PDF

A PHP Error was encountered

Severity: Warning

Message: fopen(/var/lib/php/sessions/ci_sessionikh94i8pp0tebc269c2luuckkks90ett): Failed to open stream: No space left on device

Filename: drivers/Session_files_driver.php

Line Number: 177

Backtrace:

File: /var/www/html/index.php
Line: 316
Function: require_once

A PHP Error was encountered

Severity: Warning

Message: session_start(): Failed to read session data: user (path: /var/lib/php/sessions)

Filename: Session/Session.php

Line Number: 137

Backtrace:

File: /var/www/html/index.php
Line: 316
Function: require_once