Publications by authors named "Rajeev Varshney"

Wheat stripe rust (Puccinia striiformis f. sp. tritici, Pst) is the most damaging wheat disease, causing substantial losses in global wheat production and productivity.

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Article Synopsis
  • * Researchers generated high-quality genome assemblies for 17 wheat cultivars, revealing 249,976 structural variations and significant changes due to European and American influences in the 1980s.
  • * Findings indicate that common wheat evolved traits through genetic mutations to adapt to environmental changes, with variations linked to cultural shifts and dietary needs in Northwest China.
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Wheat is among the most produced grain crops of the world and alone provides a fifth of the world's calories and protein. Wheat has played a key role in food security since the crop served as a Neolithic founder crop for the establishment of world agriculture. Projections showing a decline in global wheat yields in changing climates imply that food security targets could be jeopardized.

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Unlabelled: The current climate change has a profound impact on agricultural production. Despite the unanimous efforts of several nations to prevent further increase in global temperatures, developing adaptive strategies by imparting heat tolerance in crop plants is essential to ensure global food security. This study demonstrates the impact of heat stress on the morphological, physiological and biochemical properties of different groundnut genotypes derived from a recombinant inbred line (RIL) population (JL 24 × 55-437).

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Background: Roots perform multifaceted functions in plants such as movement of nutrients and water, sensing stressors, shaping microbiome, and providing structural support. How roots perceive and respond above traits at the molecular level remains largely unknown. Despite the enormous advancements in crop improvement, the majority of recent efforts have concentrated on above-ground traits leaving significant knowledge gaps in root biology.

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Background: Groundnut is mainly grown in the semi-arid tropic (SAT) regions worldwide, where abiotic stress like drought is persistent. However, a major research gap exists regarding exploring the genetic and genomic underpinnings of tolerance to drought. In this study, a multi-parent advanced generation inter-cross (MAGIC) population was developed and evaluated for five seasons at two locations for three consecutive years (2018-19, 2019-20 and 2020-21) under drought stress and normal environments.

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Chickpea is the world's fourth largest grown legume crop, which significantly contributes to food security by providing calories and dietary protein globally. However, the increased frequency of drought stress has significantly reduced chickpea production in recent years. Here, we have performed a field experiment with 36 diverse chickpea genotypes to evaluate grain yield, photosynthetic activities and molecular traits related to drought stress.

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Peanut is a significant source of protein for human consumption. One of the primary objectives in peanut breeding is the development of new cultivars with enhanced nutritional values. To further this goal, a genome-wide association study (GWAS) was conducted to analyze seed amino acids contents in 390 diverse peanut accessions collected worldwide, mainly from China, India, and the United States, in 2017 and 2018.

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Moso bamboo (Phyllostachys edulis), an ecologically and economically important forest species in East Asia, plays vital roles in carbon sequestration and climate change mitigation. However, intensifying climate change threatens moso bamboo survival. Here we generate high-quality haplotype-based pangenome assemblies for 16 representative moso bamboo accessions and integrated these assemblies with 427 previously resequenced accessions.

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Root-lesion nematodes (RLN) pose a significant threat to chickpea (Cicer arietinum L.) by damaging the root system and causing up to 25% economic losses due to reduced yield. Worldwide commercially grown chickpea varieties lack significant genetic resistance to RLN, necessitating the identification of genetic variants contributing to natural resistance.

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Contiguous genome sequence assemblies will help us to realize the full potential of crop translational genomics. Recent advances in sequencing technologies, especially long-read sequencing strategies, have made it possible to construct gapless telomere-to-telomere (T2T) assemblies, thus offering novel insights into genome organization and function. Plant genomes pose unique challenges, such as a continuum of ancient to recent polyploidy and abundant highly similar and long repetitive elements.

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Helicoverpa armigera (also known as gram pod borer) is a serious threat to chickpea production in the world. A set of 173 chickpea genotypes were evaluated for H. armigera resistance, including mean larval population (MLP), percentage pod damage (PPD), and pest resistance (PR) for 2 consecutive years (year 2020 and 2021).

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Under changing climatic conditions, plants are simultaneously facing conflicting stresses in nature. Plants can sense different stresses, induce systematic ROS signals, and regulate transcriptomic, hormonal, and stomatal responses. We performed transcriptome analysis to reveal the integrative stress response regulatory mechanism underlying heavy metal stress alone or in combination with heat and drought conditions in pitaya (dragon fruit).

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Developing early maturing lentil has the potential to minimize yield losses, mainly during terminal drought. Whole-genome resequencing (WGRS) based QTL-seq identified the loci governing earliness in lentil. The genetic analysis for maturity duration provided a good fit to 3:1 segregation (F), indicating earliness as a recessive trait.

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Article Synopsis
  • Nitrogen is a crucial macronutrient for plant growth, affected by various external factors like temperature and soil properties that influence its uptake and metabolism.
  • The uptake mechanisms for nitrogen, specifically ammonium and nitrate, depend on the concentration present in the soil, activating different transport systems based on nitrogen availability.
  • Genetic manipulation of nitrogen transporters can enhance biomass and crop yield, providing a potential strategy for improving nitrogen metabolism amid environmental stresses.
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Chickpea (Cicer arietinum L.)-an important legume crop cultivated in arid and semiarid regions-has limited genetic diversity. Efforts are being undertaken to broaden its diversity by utilizing its wild relatives, which remain largely unexplored.

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  • Fusarium wilt (FW) is a major soil-borne disease affecting chickpeas, leading to potential yield losses of up to 100%, prompting the need for resistant varieties.
  • The breeding program involved using the resistant WR 315 variety to develop new lines, specifically KCD 5 and KCD 11, which were tested for their disease resistance and yield performance across multiple trials.
  • KCD 11 demonstrated significant yield improvements over the JG 11 variety and regional checks, showcasing its potential as a high-yield and FW-resistant chickpea option for growers in Karnataka.
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High-altitude regions, cold deserts, permafrost regions, and the polar region have some of the severest cold conditions on earth and pose immense perils of cold injuries to exposed individuals. Accidental and unintended exposures to severe cold, either unintentionally or due to occupational risks, can greatly increase the risk of serious conditions including hypothermia, trench foot, and cold injuries like frostbite. Cold-induced vasoconstriction and intracellular/intravascular ice crystal formation lead to hypoxic conditions at the cellular level.

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Background: Chickpea is prone to many abiotic stresses such as heat, drought, salinity, etc. which cause severe loss in yield. Tolerance towards these stresses is quantitative in nature and many studies have been done to map the loci influencing these traits in different populations using different markers.

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Background: Aspergillus flavus is an important agricultural and food safety threat due to its production of carcinogenic aflatoxins. It has high level of genetic diversity that is adapted to various environments. Recently, we reported two reference genomes of A.

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  • Foliar diseases like late leaf spot (LLS) and leaf rust (LR) negatively impact groundnut yields and fodder quality, while a high oleic acid content is increasingly valued for its health benefits and extended shelf life.
  • Genetic mapping identified key resistance genes (LLSR1, LLSR2, and LR1) against these diseases, leading to the development of 49 KASP markers, with 41 successfully validated for use in breeding programs.
  • The study successfully implemented KASP assays to enhance resistance against LLS and LR in groundnuts, resulting in the release of several disease-resistant and high-oleic acid varieties in India.
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