Publications by authors named "Rafe McBeth"

Background: As we navigate towards integrating deep learning methods in the real clinic, a safety concern lies in whether and how the model can express its own uncertainty when making predictions. In this work, we present a novel application of an uncertainty-quantification framework called Deep Evidential Learning in the domain of radiotherapy dose prediction.

Method: Using medical images of the Open Knowledge-Based Planning Challenge dataset, we found that this model can be effectively harnessed to yield uncertainty estimates that inherited correlations with prediction errors upon completion of network training.

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In this work, we study various hybrid models of entropy-based and representativeness sampling techniques in the context of active learning in medical segmentation, in particular examining the role of UMAP (Uniform Manifold Approximation and Projection) as a technique for capturing representativeness. Although UMAP has been shown viable as a general purpose dimension reduction method in diverse areas, its role in deep learning-based medical segmentation has yet been extensively explored. Using the cardiac and prostate datasets in the Medical Segmentation Decathlon for validation, we found that a novel hybrid combination of Entropy-UMAP sampling technique achieved a statistically significant Dice score advantage over the random baseline (3.

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•AI dose predictor was fully integrated with treatment planning system and used as a physicain decision support tool to improve uniformity of practice.•Model was trained based on our standard of practice, but implemented at the time of expansion with 3 new physicians join the practice.•Phase 1 retrospective evaluation demonstrated the non-uniform practice among 3 MDs and only 52.

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Purpose: To present a concept called artificial intelligence-assisted contour editing (AIACE) and demonstrate its feasibility.

Materials And Methods: The conceptual workflow of AIACE is as follows: Given an initial contour that requires clinician editing, the clinician indicates where large editing is needed, and a trained deep learning model uses this input to update the contour. This process repeats until a clinically acceptable contour is achieved.

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Atrial fibrillation (AF) is a common cardiac arrhythmia and affects one to two percent of the population. In this work, we leverage the three-dimensional atrial endocardial unipolar/bipolar voltage map to predict the AF type and recurrence of AF in 1 year. This problem is challenging for two reasons: (1) the unipolar/bipolar voltages are collected at different locations on the endocardium and the shapes of the endocardium vary widely in different patients, and thus the unipolar/bipolar voltage maps need aligning to the same coordinate; (2) the collected dataset size is very limited.

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Purpose: Typically, the current dose prediction models are limited to small amounts of data and require retraining for a specific site, often leading to suboptimal performance. We propose a site-agnostic, three-dimensional dose distribution prediction model using deep learning that can leverage data from any treatment site, thus increasing the total data available to train the model. Applying our proposed model to a new target treatment site requires only a brief fine-tuning of the model to the new data and involves no modifications to the model input channels or its parameters.

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Recently, artificial intelligence technologies and algorithms have become a major focus for advancements in treatment planning for radiation therapy. As these are starting to become incorporated into the clinical workflow, a major concern from clinicians is not whether the model is accurate, but whether the model can express to a human operator when it does not know if its answer is correct. We propose to use Monte Carlo Dropout (MCDO) and the bootstrap aggregation (bagging) technique on deep learning (DL) models to produce uncertainty estimations for radiation therapy dose prediction.

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Brain injury is a significant source of morbidity and mortality for pediatric patients treated with Extracorporeal Membrane Oxygenation (ECMO). Our objective was to utilize neural networks to predict radiographic evidence of brain injury in pediatric ECMO-supported patients and identify specific variables that can be explored for future research. Data from 174 ECMO-supported patients were collected up to 24 h prior to, and for the duration of, the ECMO course.

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Purpose: In the treatment planning process of intensity-modulated radiation therapy (IMRT), a human planner operates the treatment planning system (TPS) to adjust treatment planning parameters, for example, dose volume histogram (DVH) constraints' locations and weights, to achieve a satisfactory plan for each patient. This process is usually time-consuming, and the plan quality depends on planer's experience and available planning time. In this study, we proposed to model the behaviors of human planners in treatment planning by a deep reinforcement learning (DRL)-based virtual treatment planner network (VTPN), such that it can operate the TPS in a human-like manner for treatment planning.

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Purpose: We propose a novel domain-specific loss, which is a differentiable loss function based on the dose-volume histogram (DVH), and combine it with an adversarial loss for the training of deep neural networks. In this study, we trained a neural network for generating Pareto optimal dose distributions, and evaluate the effects of the domain-specific loss on the model performance.

Methods: In this study, three loss functions - mean squared error (MSE) loss, DVH loss, and adversarial (ADV) loss - were used to train and compare four instances of the neural network model: (a) MSE, (b) MSE + ADV, (c) MSE + DVH, and (d) MSE + DVH+ADV.

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Measurements of the incident fluence of HZE particles, as a function of LET, are used to determine absorbed dose as well as Quality Factors for assigning risk estimates to astronauts during manned space missions. These data are often based on thin solid state detectors that measure energy deposition, dE, and the assumption that the trajectory of the particle, dx, is equivalent to the thickness of the detector. Heavy ions often fragment while penetrating shielding materials in vehicles or habitats.

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In order to define the ranges of relevant neutron energies for the purposes of measurement and dosimetry in space, we have performed a series of Monte Carlo transport model calculations that predict the neutron field created by Galactic Cosmic Ray interactions inside a variety of simple shielding configurations. These predictions indicate that a significant fraction of the neutron fluence and neutron effective dose lies in the region above 20 MeV up to several hundred MeV. These results are consistent over thicknesses of shielding that range from very thin (2.

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NASA has derived new models for radiological risk assessment based on epidemiological data and radiation biology including differences in Relative Biological Effectiveness for leukemia and solid tumors. Comprehensive approaches were used to develop new risk cross sections and the extension of these into recommendations for risk assessment during space missions. The methodology relies on published data generated and the extensive research initiative managed by the NASA Human Research Program (HRP) and reviewed by the National Academy of Sciences.

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