Structural equation models to disentangle the biological relationship between microbiota and complex traits: Methane production in dairy cattle as a case of study.

The advent of metagenomics in animal breeding poses the challenge of statistically modelling the relationship between the microbiome, the host genetics and relevant complex traits. A set of structural equation models (SEMs) of a recursive type within a Markov chain Monte Carlo (MCMC) framework was proposed here to jointly analyse the host-metagenome-phenotype relationship. A non-recursive bivariate model was set as benchmark to compare the recursive model.

Expected consequences of including methane footprint into the breeding goals in beef cattle. A Spanish Blonde d'Aquitaine population as a case of study.

This study evaluates two potential scenarios for including methane (CH ) emissions in the breeding objectives of beef cattle, using the Spanish population of Blonde d'Aquitaine as a case of study. First, CH emissions were included as a cost using a shadow carbon price of 1.22€/CH kg (0.

Influence of age at first calving in a continuous calving season on productive, functional, and economic performance in a Blonde d'Aquitaine beef population.

The lifetime production of 7,655 cows with known age at first calving and a total of 27,118 parity records from 301 purebred Blonde d'Aquitaine herds were used to demonstrate the economic benefits of 2 yr of age at first calving. Ages at first calving ranged from 20 to 48 mo, and cows were divided into 5 calving groups, starting with early calving from age 20 to 27 mo up to late calving from age 40 to 48 mo. The information was gathered into 2 data sets, one for only primiparous cows and the second for all cows.

Genetic relationship of discrete-time survival with fertility and production in dairy cattle using bivariate models.

Bivariate analyses of functional longevity in dairy cattle measured as survival to next lactation (SURV) with milk yield and fertility traits were carried out. A sequential threshold-linear censored model was implemented for the analyses of SURV. Records on 96,642 lactations from 41,170 cows were used to estimate genetic parameters, using animal models, for longevity, 305 d-standardized milk production (MY305), days open (DO) and number of inseminations to conception (INS) in the Spanish Holstein population; 31% and 30% of lactations were censored for DO and INS, respectively.