Effects of snake fungal disease (ophidiomycosis) on the skin microbiome across two major experimental scales.

Emerging infectious diseases are increasingly recognized as a significant threat to global biodiversity conservation. Elucidating the relationship between pathogens and the host microbiome could lead to novel approaches for mitigating disease impacts. Pathogens can alter the host microbiome by inducing dysbiosis, an ecological state characterized by a reduction in bacterial alpha diversity, an increase in pathobionts, or a shift in beta diversity.

Cross-domain comparison and the politics of difference.

This paper makes the case for cross-domain comparison as an undertheorized form of comparative analysis. The units of analysis in such comparisons are not (as in most comparative analysis) predefined units within a domain or system of formally similar yet substantively different categories or entities; they are the domains or systems of categorically organized differences themselves. Focusing on domains of categorical difference that are central to the contemporary politics of difference, we consider two examples of cross-domain comparison.

Mapping Interaction Sites on Human Chemokine Receptors by Deep Mutational Scanning.

Chemokine receptors CXCR4 and CCR5 regulate WBC trafficking and are engaged by the HIV-1 envelope glycoprotein gp120 during infection. We combine a selection of human CXCR4 and CCR5 libraries comprising nearly all of ∼7000 single amino acid substitutions with deep sequencing to define sequence-activity landscapes for surface expression and ligand interactions. After consideration of sequence constraints for surface expression, known interaction sites with HIV-1-blocking Abs were appropriately identified as conserved residues following library sorting for Ab binding, validating the use of deep mutational scanning to map functional interaction sites in G protein-coupled receptors.