Publications by authors named "Qiumei Ji"

Article Synopsis
  • The Yak Genome Database is a multi-omics resource designed to enhance our understanding of the genetic makeup and adaptive traits of yaks, which thrive in high-altitude environments.
  • It houses extensive data, including 26,518 genes, 62 transcriptomes, 144,309 proteome spectra, and 22,478 methylation sites, offering detailed insights into yak biology.
  • This database serves as a vital platform for researchers, facilitating data sharing and exploration to aid in studies of yak development, high-altitude adaptation mechanisms, and molecular breeding efforts.
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The reconstruction of posterior lamellar eyelid defects remains a significant challenge in clinical practice due to anatomical complexity, specialized function, and aesthetic concerns. The ideal substitute for the posterior lamellar should replicate the native tarsoconjunctival tissue, providing both mechanical support for the eyelids and a smooth surface for the globe after implantation. In this study, we present an innovative approach utilizing tissue-engineered cartilage (TEC) grafts generated from rabbit auricular chondrocytes and a commercialized type I collagen sponge to reconstruct critical-sized posterior lamellar defects in rabbits.

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Reconstruction of posterior lamellar eyelids remains challenging due to their delicate structure, highly specialized function, and cosmetic concerns. Current clinically available techniques for posterior lamellar reconstruction mainly focus on reconstructing the contour of the eyelids. However, the posterior lamella not only provides structural support for the eyelid but also offers a smooth mucosal surface to facilitate globe movement and secrete lipids to maintain ocular surface homeostasis.

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Yak has evolved specific adaptative mechanisms to high-altitude environment. Up to date, only a few studies reported the DNA methylation in yak. In the present study, genome-wide DNA methylome and transcriptome profiles in lung, mammary, and biceps brachii muscle tissues were compared between yak and three cattle breeds (Tibetan cattle, Sanjiang cattle, and Holstein cattle).

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Reconstruction of eyelid defects, especially the posterior lamella, remains challenging because of its anatomical complexity, functional considerations, and aesthetic concerns. The goals of eyelid reconstruction include restoring eyelid structure and function and achieving an aesthetically acceptable appearance. An in-depth understanding of the complex eyelid anatomy and several reconstructive principles are mandatory to achieve these goals.

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Article Synopsis
  • Both 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC) are key epigenetic modifications influencing brain development, yet little is known about their patterns in high-altitude animals like yaks.
  • Using advanced sequencing techniques, researchers created the first comprehensive maps of these modifications in various brain regions (brain, brainstem, cerebellum, and hypothalamus) of yaks and cattle.
  • Results showed significant differences in 5mC and 5hmC levels, particularly a decrease in 5mC and an increase in 5hmC in the hypothalamus, indicating a potential impact on gene regulation related to neuromod
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Article Synopsis
  • Yaks have unique lung and heart adaptations for high-altitude living, but the specific molecular mechanisms are not well understood.
  • A study compared the proteins in the lung and heart tissues of yaks to three cattle strains using advanced proteomic techniques, identifying over 7,200 proteins and numerous proteins that are differentially abundant.
  • The analysis revealed specific protein pathways related to immune function and cardiac performance that may explain how yaks manage low oxygen levels and maintain heart function in high altitudes.
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Background: The yak () is an important livestock species that can survive the extremely cold, harsh, and oxygen-poor conditions of the Qinghai-Tibetan Plateau and provide meat, milk, and transportation for the Tibetans living there. However, the regulatory network that drive this hypoxic adaptation remain elusive.

Results: The heart tissues from LeiRoqi (LWQY) yak and their related cattle () breeds, which are two native cattle breeds located in high altitude (HAC) and low altitude (LAC) regions, respectively, were collected for RNA sequencing.

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Background: On the Qinghai-Tibet Plateau, known as the roof ridge of the world, the yak is a precious cattle species that has been indispensable to the human beings living in this high-altitude area. However, the origin of domestication, dispersal route, and the divergence of domestic yaks from different areas are poorly understood.

Results: Here, we resequenced the genome of 91 domestic yak individuals from 31 populations and 1 wild yaks throughout China.

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Background: Domestic yaks play an indispensable role in sustaining the livelihood of Tibetans and other ethnic groups on the Qinghai-Tibetan Plateau (QTP), by providing milk and meat. They have evolved numerous physiological adaptations to high-altitude environment, including strong blood oxygen transportation capabilities and high metabolism. The roles of DNA methylation and gene expression in milk production and high-altitudes adaptation need further exploration.

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Article Synopsis
  • - The study investigates how yaks have adapted to high-altitude living by focusing on long non-coding RNAs (lncRNAs) in their gluteus muscle compared to different cattle breeds.
  • - Researchers found that yaks have higher expressions of genes related to fatty acid oxidation and lower expressions of glucose metabolism genes, suggesting a shift in energy use to adapt to their environment.
  • - The findings also indicate unique lncRNA functions that may help yaks manage stress and muscle function, with results showing differences in calcium handling and muscle contraction mechanisms when compared to cattle species.
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Background: miRNAs play an important role in regulating normal animal development. Muscle tissue and fat metabolism are important for maintaining energy balance in animals. Yak has important agricultural and economic importance as it provides milk, meat, and hair.

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Article Synopsis
  • Yak exhibits unique adaptations to the high-altitude Qinghai-Tibetan Plateau, and a study analyzed the proteomic profiles of yak gluteus muscle compared to various cattle strains to understand these mechanisms.
  • The research identified significant differences in protein expression: yak had 20, 364, and 143 upregulated proteins compared to Tibetan, Holstein, and Sanjiang cattle, respectively, with many related to energy processes like oxidative phosphorylation.
  • Key proteins associated with increased mitochondrial capacity and protection against oxidative damage were found in yaks, indicating their enhanced metabolic function is a long-term adaptation to survive in high-altitude environments.
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Article Synopsis
  • Yak are crucial livestock for people living in the harsh environments of the Qinghai-Tibetan Plateau and the Himalayas, highlighting the need for a complete genome assembly for better genetic study.
  • This study presents a high-quality chromosome-scale yak genome assembly (BosGru_PB_v1.0) using advanced long-read sequencing, improving upon previous fragmented versions by increasing sequence continuity and reducing ambiguities.
  • The research also generated genome assemblies for multiple domestic yak breeds and one wild yak, revealing genetic diversity and identifying unique breed-specific genes, which can help in distinguishing different yak breeds.
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Known as the 'ship of the plateau', through thousands of years evolution and cruelty environments selection containing low oxygen and strong ultraviolet radiation, yaks have adapted plateau environments and supplied important goods and materials for the people in the Qinghai-Tibet Plateau. This study aimed to identify differentially expressed (DE) genes and novel long non-coding RNAs (lncRNAs) of yaks for the Plateau adaptation and their underlying co-expression and regulatory network. We carried out RNA-seq analysis for cerebral and cerebellar tissue specimens of Bos taurus, Bos grunniens × Bos Taurus and B.

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Background: The Intramuscular fat (IMF) content in meat products, which is positively correlated with meat quality, is an important trait considered by consumers. The regulation of IMF deposition is species specific. However, the IMF-deposition-related mRNA and non-coding RNA and their regulatory network in yak (Bos grunniens) remain unknown.

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Background: In obstetrics, labor induction is a common procedure. It has been proved that both single balloon catheters (Foley's catheter) and double balloon catheters (Cook cervical ripening balloon) are effective and relatively safe in cervical ripening and labor induction. This research aimed to compare the efficacy of single and double balloon catheter in the induction of labor with scarred uterus.

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Article Synopsis
  • The yak, an essential animal on the Qinghai-Tibet Plateau, has adapted its immune system to thrive in high-altitude environments.
  • A study analyzed gene expression in the lungs and gluteus tissues of yaks at various ages (6, 30, 60, and 90 months) to understand how immune function changes during development.
  • Findings revealed that immune activation peaked at 6 and 90 months, suggesting increased resistance to infections in younger yaks, while higher activation in older yaks may be linked to muscle injuries and regeneration.
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Yak () is an unique ruminant species in the Qinghai-Tibetan Plateau (QTP). The ruminant gastrointestinal tract (GIT) microbiota is not only associated with the nutrients metabolism, but also contributes to the host's local adaptation. Examining the microbiota between cattle and yak in different geography could improve our understanding about the role of microbiota in metabolism and adaptation.

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Article Synopsis
  • The study investigates how yaks are able to adapt to the high-altitude environment of the Qinghai-Tibet Plateau compared to low-altitude cattle species through molecular mechanisms.* -
  • The researchers found that specific genes related to red blood cell development and immune response are differently expressed in yaks, which may help them cope with conditions like lower oxygen levels and reduced risk of disease.* -
  • Changes in gene expression for blood coagulation and ion channel activity in yaks suggest adaptations that minimize the risk of pulmonary edema, making them well-suited for high-altitude living.*
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Background: Genomic structural variation represents a source for genetic and phenotypic variation, which may be subject to selection during the environmental adaptation and population differentiation. Here, we described a genome-wide analysis of copy number variations (CNVs) in 16 populations of yak based on genome resequencing data and CNV-based cluster analyses of these populations.

Results: In total, we identified 51,461 CNV events and defined 3174 copy number variation regions (CNVRs) that covered 163.

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Brucellosis is considered as an endemic disease in yaks (Bos grunniens) in China, but few economic analyses describing the cost of the disease and potential benefits of control have been reported. The aim of the study was to estimate the economic cost of brucellosis in yaks and the economic value of three control strategies: (a) vaccination; (b) test-and-slaughter; and (c) a combination of vaccination and test-and-slaughter programs in Damxung and Maizhokunggar counties and Pali township of Yadong county in Tibet. Using data from a cross-sectional seroprevalence survey conducted in 2015, combined with financial data, the predicted costs and benefits of the different control strategies were simulated over a 6-year period.

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The yak is one of the most important and economically useful animals for highlanders. The decline in the yak population requires effective measures for the conservation and multiplication of elite germplasm. A standardized protocol will simplify the freezing and warming of yak embryos in straw and facilitate embryo transfer.

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The carcass size performances and the meat quality of Gannan and Sibu yak were determined using M. supraspinatus (SU), M. longissimus thoracis (LT) and M.

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