Publications by authors named "Qingyun Bu"

Members of the B-Box (BBX) family of proteins play crucial roles in the growth and development of rice. Here, we identified a rice BBX protein, Oryza sativa BBX2 (OsBBX2), which exhibits the highest expression in the root. The transcription of follows a diurnal rhythm under photoperiodic conditions, peaking at dawn.

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Integrated genome-wide association study and linkage mapping revealed genetic basis of alkalinity tolerance during rice germination. The key gene OsWRKY49 was further verified in transgenic plants. With the widespread use of the rice direct seeding cultivation model, improving the tolerance of rice varieties to salinity-alkalinity at the germination stage has become increasingly important.

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A high-fat diet (HFD) is often associated with hepatic lipid metabolism disorders, leading to dysfunction in multiple body systems. Ginsenosides derived from Panax ginseng have been reported to possess potential effects in ameliorating lipid metabolism disorders; however, their underlying mechanisms remain insufficiently explored. This study aims to investigate the bioactivities of ginsenosides in combating lipid metabolism disorders and obesity, with a focus on their mechanisms involving the cholesterol metabolism signaling pathway and gut microbiota.

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Unlabelled: Duck circovirus (DuCV) is widely recognized as a prominent virus in China's duck farming industry, known for its ability to cause persistent infections and significant immunosuppression, which can lead to an increased susceptibility to secondary infections, posing a significant threat to the duck industry. Moreover, clinical evidence also indicates the potential vertical transmission of the virus through duck embryos to subsequent generations of ducklings. However, the limited availability of suitable cell lines for cultivation of DuCV has hindered further investigation into the molecular mechanisms underlying its infection and pathogenicity.

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  • Ginsenoside Rb, a compound with various biological effects, is mainly metabolized by gut microbiota, but its pharmacokinetics in relation to these microbes are not well understood.
  • A 30-day supplementation study in rats showed that Rb significantly altered the gut microbiome and changed how Rb was absorbed and cleared from the body.
  • The research found an increase in Bacteroides cellulosilyticus and specific glycoside hydrolase families in the gut, indicating a complex relationship between these microbes and the metabolism of Rb.
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  • Rice flowering time is crucial for its geographical distribution and yield, with two early-flowering cultivars, DN413 and XN, used for genetic investigation.
  • A novel allele was identified that affects flowering time, showing that the Hap_E variant leads to earlier flowering compared to Hap_D.
  • The study developed a CAPS marker for breeding, highlighting a new target for improving rice varieties suited for high-latitude regions.
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  • The rice SnRK2 members SAPK4, SAPK5, SAPK7, and SAPK10 are identified as positive regulators of flowering in rice, while some members like SAPK1, SAPK2, and SAPK3 do not show significant effects on this process.
  • These SAPK proteins are crucial in the abscisic acid pathway, impacting not just flowering, but also traits like drought resistance and salt tolerance that are important for rice yield.
  • This study utilized gene editing to analyze SAPK functions in rice flowering and aims to further investigate the molecular mechanisms of these proteins to improve understanding and breeding strategies related to rice ripening dates.
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  • The study focuses on the role of a specific gene related to PPR proteins in rice, which is crucial for chloroplast development and photosynthesis.
  • Researchers identified a mutant rice plant with pale green leaves, indicating reduced chlorophyll and abnormal chloroplast development compared to the wild type.
  • Using CRISPR/Cas9 gene editing, they confirmed that the identified gene affects RNA editing and splicing within chloroplasts, highlighting its importance in regulating chloroplast function in rice plants.
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  • * The study identifies OsUBC12, an E2 ubiquitin-conjugating enzyme, which increases germinability at low temperatures in japonica rice due to a transposon insertion in its promoter that boosts expression levels.
  • * The research reveals that OsUBC12 regulates seed germination by negatively impacting ABA signaling, and it works with the protein OsSnRK1.1 to promote degradation of this protein, which ultimately inhibits LTG.
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Hyperlipidemia, characterized by elevated serum lipid concentrations resulting from lipid metabolism dysfunction, represents a prevalent global health concern. Ginsenoside Rb1, compound K (CK), and 20(S)-protopanaxadiol (PPD), bioactive constituents derived from Panax ginseng, have shown promise in mitigating lipid metabolism disorders. However, the comparative efficacy and underlying mechanisms of these compounds in hyperlipidemia prevention remain inadequately explored.

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Research accumulated over the past decades has shown that mycoprotein could serve as a healthy and safe alternative protein source, offering a viable substitute for animal- and plant-derived proteins. This study evaluated the impact of substituting whey protein with fungal-derived mycoprotein at different levels (10%, 20%, and 30%) on the quality of high-protein nutrition bars (HPNBs). It focused on nutritional content, textural changes over storage, and sensory properties.

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  • Panicle exsertion is an important trait for rice production, and its shortening can lead to reduced seed yield due to panicle enclosure.
  • The oswrky78 mutant displays severe panicle enclosure linked to decreased levels of bioactive gibberellin (GA).
  • The study shows that OsWRKY78 enhances GA biosynthesis and interacts with MAPK kinase OsMAPK6, which stabilizes OsWRKY78 and is crucial for its function in regulating panicle exsertion.
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  • Rice is sensitive to cold temperatures, which greatly affects production, yet the specific signaling pathways for chilling stress are not well understood.
  • Research demonstrates that the gene OsMAPK6 plays a crucial role in enhancing rice's ability to tolerate cold, with overexpressed plants showing higher survival rates compared to mutants with decreased function.
  • Findings suggest that OsMAPK6 promotes chilling tolerance through a signaling cascade involving key regulators, contributing valuable insights into rice cold response, particularly at the seedling stage.
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Introduction: Rice flowering is a major agronomic trait, determining yield and ecological adaptability in particular regions. ABA plays an essential role in rice flowering, but the underlying molecular mechanism remains largely elusive.

Objectives: In this study, we demonstrated a "SAPK8-ABF1-Ehd1/Ehd2" pathway, through which exogenous ABA represses rice flowering in a photoperiod-independent manner.

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As one of the most widely grown crops in the world, rice is not only a staple food but also a source of calorie intake for more than half of the world's population, occupying an important position in China's agricultural production. Thus, determining the inner potential connections between the genetic mechanisms and phenotypes of rice using dynamic analyses with high-throughput, nondestructive, and accurate methods based on high-throughput crop phenotyping facilities associated with rice genetics and breeding research is of vital importance. In this work, we developed a strategy for acquiring and analyzing 58 image-based traits (i-traits) during the whole growth period of rice.

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Deciphering the intrinsic molecular logic of empirical crop breeding from a genomic perspective is a decisive prerequisite for breeding-by-design (BbD), but remains not well established. Here, we decoded the historical features of past rice breeding by phenotyping and haplotyping 546 accessions covering the majority of cultivars bred in the history of Northeast China (NEC). We revealed that three groups founded the genetic diversities in NEC rice with distinct evolution patterns and traced and verified the breeding footprints to known or genome-wide association study (GWAS)-detected quantitative trait loci (QTLs), or introgressions from sub-species with chronological changes in allele frequencies.

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Cold stress at the booting stage leads to a lower seed setting rate and seriously threatens the production of rice ( L.), which has become a major yield-limiting factor in higher-altitude and -latitude regions. Because cold tolerance at the booting stage (CTB) is a complex trait and is controlled by multiple loci, only a few genes have been reported so far.

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BJC16-A38, a Gram-negative, aerobic and non-motile rod-shaped strain was isolated from a permafrost wetland soil sample. BJC16-A38 was oxidase- and catalase-positive, and produced pale yellow colonies on modified R2A agar plates. The 16S rRNA gene sequence of BJC16-A38 shared the highest sequence similarity with those of Mucilaginibacter xinganensis BJC16-A31 (97.

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Cold tolerance at the booting (CTB) stage is a major factor limiting rice (Oryza sativa L.) productivity and geographical distribution. A few cold-tolerance genes have been identified, but they either need to be overexpressed to result in CTB or cause yield penalties, limiting their utility for breeding.

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Flowering time is a fundamental factor determining the global distribution and final yield of rice (Oryza sativa). Although diverse flowering time genes have been reported in this crop, the transcriptional regulation of its key flowering genes are poorly understood. Here, we report that a basic leucine zipper transcription factor, bZIP71, functions as a flowering repressor.

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Gut microbiota plays an important role in metabolic homeostasis. Previous studies demonstrated that ginsenoside Rb1 might improve obesity-induced metabolic disorders through regulating glucose and lipid metabolism in the liver and adipose tissues. Due to low bioavailability and enrichment in the intestinal tract of Rb1, we hypothesized that modulation of the gut microbiota might account for its pharmacological effects as well.

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OsWRKY24 functions redundantly with OsWRKY53, while OsWRKY70 functions differently from OsWRKY53 in regulating grain size. Grain size is a key agronomic trait that affects grain yield and quality in rice (Oryza sativa L.).

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