Publications by authors named "Qingyou Liu"

A detailed understanding of the precise regulatory mechanisms governing buffalo skeletal muscle is crucial for improving meat quality and yield. Proper skeletal muscle fate decisions necessitate the accurate regulation of key enhancers. This study screened nine potential enhancers linked to muscle development by analysing ATAC-seq data from buffalo myoblasts during the proliferative and differentiative phases.

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With the rapid development of hydrogen pipelines, their safety issues have become increasingly prominent. In order to evaluate the properties of pipeline materials under a high-pressure hydrogen environment, this study investigates the hydrogen embrittlement sensitivity of X70 welded pipe in a 10 MPa high-pressure hydrogen environment, using slow strain rate testing (SSRT) and low-cycle fatigue (LCF) analysis. The microstructure, slow tensile and fatigue fracture morphology of base metal (BM) and weld metal (WM) were characterized and analyzed by means of ultra-depth microscope, scanning electron microscope (SEM), electron backscattering diffraction (EBSD), and transmission electron microscope (TEM).

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Milk is one of the most common sources of nutrients in humans, however, the composition and healthy value of the milk derived from different animals are very different. Here, we systemically compared the protein and lipid profiles and evaluated the anti-inflammation and antioxidant effect of buffalo and Holstein-derived milk on Caco-2 cells. Results showed that 906 proteins and 1899 lipids were identified in the buffalo milk and Holstein milk samples including 161 significantly different proteins (DEPs) and 49 significantly different lipids.

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Article Synopsis
  • - The study investigates the reproductive performance of water buffaloes by analyzing gene expression in granulosa cells and oocytes from follicles of varying sizes to identify key genes involved in follicle development.
  • - Researchers identified 918 transcripts from granulosa cells and 1401 from oocytes that correlated with follicle size, revealing significant expression differences and highlighting the roles of specific genes and lncRNAs in follicular growth.
  • - The findings suggest that genes like BUB1, influenced by certain lncRNAs, and others related to hormone metabolism may be crucial for improving reproductive performance in buffaloes, offering insights into the mechanisms behind follicle dominance.
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Super-enhancers (SEs) govern the expression of genes defining cell identity. However, the dynamic landscape of SEs and their critical constituent enhancers involved in skeletal muscle development remains unclear. In this study, using pig as a model, we employed cleavage under targets and tagmentation (CUT&Tag) to profile the enhancer-associated histone modification marker H3K27ac in skeletal muscle across two prenatal and three postnatal stages, and investigated how SEs influence skeletal muscle development.

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Background: Fundus vessel segmentation is vital for diagnosing ophthalmic diseases like central serous chorioretinopathy (CSC), diabetic retinopathy, and glaucoma. Accurate segmentation provides crucial vessel morphology details, aiding the early detection and intervention of ophthalmic diseases. However, current algorithms struggle with fine vessel segmentation and maintaining sensitivity in complex regions.

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  • Chloride channels (ClCs) are crucial for maintaining ion balance and various physiological functions in mammals, including neuronal signaling and muscle contraction.
  • This study mapped out the chloride voltage-gated channel (CLCN) gene family in buffalo, identifying eight genes and analyzing their properties, evolutionary patterns, and structural features.
  • The findings revealed strong conservation of these genes among species, positive selection indicators, and differences in transcription factor binding sites between buffalo and cattle.
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Plain carbon steel is the most widely applied steel in current engineering construction. With the increased application property needs, the service life of plain carbon steel has been severely tested. As one of the most destructive failure modes, corrosion resistance of carbon steel has attracted wide attention.

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Black goats are a significant meat breed in southern China. To investigate the expression patterns and biological functions of genes in various tissues of black goats, we analyzed housekeeping genes (HKGs), tissue-specific genes (TSGs), and hub genes (HUBGs) across 23 tissues. Additionally, we analyzed HKGs in 13 tissues under different feeding conditions.

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Milking methods have significant impacts on the microbiological composition, which could affect the quality of raw buffalo milk. Hence, the current study was conducted on the impact of milking methods on microorganisms in buffalo tank raw milk from 15 farms in Guangxi, China. The farms were divided into two groups based on the milking method: mechanical milking (MM, = 6) and hand milking (HM, = 9).

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Although the relationship between vaginal microorganisms and fertility has been well established, only few studies have investigated vaginal microorganisms in women undergoing in vitro fertilization (IVF). Our aim was to study the differences in vaginal microbiota between infertile women with repeated implantation failure (RIF) and those who achieved clinical pregnancy in their first frozen embryo transfer cycle. We compared the vaginal microbiota of patients with a history of RIF (n = 37) with that of the control group (n = 43).

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Muscle development is a multistep process regulated by diverse gene networks, and circRNAs are considered novel regulators mediating myogenesis. Here, we systematically analyzed the role and underlying regulatory mechanisms of circRBBP7 in myoblast proliferation and differentiation. Results showed that circRBBP7 has a typical circular structure and encodes a 13 -kDa protein.

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Peroxisome proliferator-activated receptor γ (PPARG) has various splicing variants and plays essential roles in the regulation of adipocyte differentiation and lipogenesis. However, little is known about the expression pattern and effect of the PPARG on milk fat synthesis in the buffalo mammary gland. In this study, we found that only and of the splicing variant were expressed in the buffalo mammary gland.

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Article Synopsis
  • Single-cell RNA sequencing (scRNA-seq) technology has evolved since 2009, allowing researchers to analyze gene expression in individual cells, highlighting tissue cell diversity unlike traditional bulk RNA-seq.
  • The review outlines key advancements in scRNA-seq techniques, such as smart-seq and 10 × Genomics, and discusses their widespread application in medical and biological research, particularly in fields like cancer and stem cell research.
  • Despite its advancements, scRNA-seq still faces limitations, and the review aims to clarify its capabilities and shortcomings, while suggesting future research directions to enhance its utility in scientific studies.
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Introduction: The buffalo is an important domestic animal globally, providing milk, meat, and labor to more than 2 billion people in 67 countries. The rumen microorganisms of buffaloes play an indispensable role in enabling the healthy functionality and digestive function of buffalo organisms. Currently, there is a lack of clarity regarding the differences in the composition and function of rumen microorganisms among buffaloes at different growth stages.

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Mastitis is one of the most serious diseases that threatens the health of dairy animals. The somatic cell count (SCC) in milk is widely used to monitor mastitis. This study aimed to reveal the diversity of microorganisms in buffalo milk with high somatic cell count (SCC ≥ 3 × 10 cells/mL, n = 30) and low somatic cell count (SCC ≤ 5 × 10 cells/mL, n = 10), and identify the dominant bacteria that cause mastitis in a local buffalo farm.

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The search for DNA polymorphisms useful for the genetic improvement of dairy farm animals has spanned more than 40 years, yielding relevant findings in cattle for milk traits, where the best combination of alleles for dairy processing has been found in casein genes and in . Nowadays, similar results have not yet been reached in river buffaloes, despite the availability of advanced genomic technologies and accurate phenotype records. The aim of the present study was to investigate and validate the effect of four single nucleotide polymorphisms (SNP) in the , , and genes on seven milk traits in a larger buffalo population.

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Intramuscular fat (IMF) is a crucial determinant of meat quality and is influenced by various regulatory factors. Despite the growing recognition of the important role of long noncoding RNAs (lncRNAs) in IMF deposition, the mechanisms underlying buffalo IMF deposition remain poorly understood. In this study, we identified and characterized a lncRNA, lncFABP4, which is transcribed from the antisense strand of fatty acid-binding protein 4 (FABP4).

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Article Synopsis
  • * A new computational method called SRY was developed, improving chromosome assembly, especially in challenging regions, and works well with existing hybrid assembly software.
  • * This advancement allows for complete genome assemblies, paving the way for better research opportunities related to sex-limited chromosomes.
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Background: Ruminants are important livestock animals that have a unique digestive system comprising multiple stomach compartments. Despite significant progress in the study of microbiome in the gastrointestinal tract (GIT) sites of ruminants, we still lack an understanding of the viral community of ruminants. Here, we surveyed its viral ecology using 2333 samples from 10 sites along the GIT of 8 ruminant species.

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Recently, it has been discovered that certain dairy buffaloes can produce higher milk yield and milk fat yield under the same feeding management conditions, which is a potential new trait. It is unknown to what extent, the rumen microbiome and its metabolites, as well as the host metabolism, contribute to milk yield and milk fat yield. Therefore, we will analyze the rumen microbiome and host-level potential regulatory mechanisms on milk yield and milk fat yield through rumen metagenomics, rumen metabolomics, and serum metabolomics experiments.

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In diploid mammals, allele-specific three-dimensional (3D) genome architecture may lead to imbalanced gene expression. Through ultradeep in situ Hi-C sequencing of three representative somatic tissues (liver, skeletal muscle, and brain) from hybrid pigs generated by reciprocal crosses of phenotypically and physiologically divergent Berkshire and Tibetan pigs, we uncover extensive chromatin reorganization between homologous chromosomes across multiple scales. Haplotype-based interrogation of multi-omic data revealed the tissue dependence of 3D chromatin conformation, suggesting that parent-of-origin-specific conformation may drive gene imprinting.

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The mammary gland of mammals can generate numerous bioactive proteins. To express the human amylin protein in the mammary glands of domestic animals, we engineered a transgenic mammary gland bioreactor. For this study, we produced transgenic mice through prokaryotic microinjection.

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In recent years, the meat and dairy value of buffaloes has become a major concern in buffalo breeding, and the improvement of buffalo beef quality is key to protecting buffalo germplasm resources and solving the problem of beef supply. MiRNAs play a significant role in regulating muscle development. However, the precise mechanism by which they regulate the development of buffalo skeletal muscles remains largely unexplored.

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