Publications by authors named "Qijia Yu"

Convolutional neural networks (CNNs) are well established in handling local features in visual tasks; yet, they falter in managing complex spatial relationships and long-range dependencies that are crucial for medical image segmentation, particularly in identifying pathological changes. While vision transformer (ViT) excels in addressing long-range dependencies, their ability to leverage local features remains inadequate. Recent ViT variants have merged CNNs to improve feature representation and segmentation outcomes, yet challenges with limited receptive fields and precise feature representation persist.

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Elasticity, featured by a recoverable strain, refers to the ability that materials can return to their original shapes after deformation. Typically, the elastic strains of most metals are well-known 0.2%.

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Porcine epidemic diarrhea virus (PEDV) causes acute diarrhea, vomiting, dehydration, and high mortality in newborn piglets, which leads to significant economic losses. Coronavirus nonstructural protein 9 (Nsp9) is an essential RNA binding protein for coronavirus replication, which renders it a promising candidate for developing antiviral drugs and diagnosis targeting PEDV. In this study, PEDV Nsp9 protein fused with MBP protein and His-tag were expressed and purified in Escherichia coli.

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Pancreatic ductal adenocarcinoma (PDAC) evolves a complex microenvironment comprised of multiple cell types, including pancreatic stellate cells (PSC). Previous studies have demonstrated that stromal supply of alanine, lipids, and nucleotides supports the metabolism, growth, and therapeutic resistance of PDAC. Here we demonstrate that alanine cross-talk between PSCs and PDAC is orchestrated by the utilization of specific transporters.

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Article Synopsis
  • Researchers are developing covalent inhibitors targeting the KRAS oncoprotein and testing them in clinical trials, but resistance to these treatments can limit their long-term effectiveness.
  • By utilizing mass-spectrometry-based quantitative temporal proteomics, they profiled the response to KRAS inhibitors in various cancer cell models, identifying over 10,000 proteins involved.
  • The study found that combining KRAS inhibitors with other drugs like PI3K and HSP90 inhibitors can shift treatment responses from being merely halting (cytostatic) to actively killing cancer cells (cytotoxic), suggesting effective treatment strategies against resistant tumors.
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Accumulated evidence demonstrates that Japanese encephalitis virus (JEV) infection triggers endoplasmic reticulum (ER) stress and neuron apoptosis. ER stress sensor protein kinase R-like endoplasmic reticulum kinase (PERK) has been reported to induce apoptosis under acute or prolonged ER stress. However, the precise role of PERK in JEV-induced apoptosis and encephalitis remains unknown.

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  • MHC-I peptides, which are important for activating CD8 T cells in the immune response, are often not well understood, especially regarding the specific ligands involved in antitumor responses.
  • Researchers developed a new multiplexing platform using tandem mass tags (TMTs) to quantify changes in MHC-I ligands following cancer therapies.
  • Their study focused on doxorubicin, showing it induces MHC-I peptides from proteins involved in cell cycle and mitosis, potentially enhancing the effectiveness of CD8 T-cell-based immunotherapies.
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Galanthus nivalis agglutinin-related lectins, a superfamily of strictly mannose-binding-specific lectins widespread amongst monotyledonous plants, have drawn a rising attention for their remarkable anti-proliferative and apoptosis-inducing activities toward various types of cancer cells; however, the precise molecular mechanisms by which they induce tumor cell apoptosis are still only rudimentarily understood. Herein, we found that the three conserved motifs "QXDXNXVXY," the mannose-specific binding sites, could mutate at one or more amino acid sites, which might be a driving force for the sequential evolution and thus ultimately leading to the complete disappearance of the three conserved motifs. In addition, we found that the motif evolution could result in the diversification of sugar-binding types that G.

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Autophagy (macroautophagy), an evolutionarily conserved lysosomal degradation process, is implicated in a wide variety of pathological processes including cancer. Autophagy plays the Janus role in regulating several survival or death signaling pathways that may decide the fate of cancer cell. Accumulating evidence has revealed the core molecular machinery of autophagy in tumor initiation and progression; however, the intricate relationships between autophagy and cancer are still in its infancy.

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Polygonatum cyrtonema lectin (PCL), a mannose/sialic acid-binding plant lectin, has recently drawn a rising attention for cancer biologists because PCL bears remarkable anti-tumor activities and thus inducing programmed cell death (PCD) including apoptosis and autophagy in cancer cells. In this review, we focus on exploring the precise molecular mechanisms by which PCL induces cancer cell apoptotic death such as the caspase-dependent pathway, mitochondria-mediated ROS-p38-p53 pathway, Ras-Raf and PI3K-Akt pathways. In addition, we further elucidate that PCL induces cancer cell autophagic death via activating mitochondrial ROS-p38-p53 pathway, as well as via blocking Ras-Raf and PI3K-Akt pathways, suggesting an intricate relationship between autophagic and apoptotic death in PCL-induced cancer cells.

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