Publications by authors named "Qijia Shen"

Purpose: To achieve ultra-high temporal resolution non-contrast 4D angiography with improved spatiotemporal fidelity.

Methods: Continuous data acquisition using 3D golden-angle sampling following an arterial spin labeling preparation allows for flexibly reconstructing 4D dynamic angiograms at arbitrary temporal resolutions. However, k-space data is often temporally "binned" before image reconstruction, negatively affecting spatiotemporal fidelity and limiting temporal resolution.

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Purpose: To improve the spatial resolution and repeatability of a non-contrast MRI technique for simultaneous time resolved 3D angiography and perfusion imaging by developing an efficient 3D cone trajectory design.

Methods: A novel parameterized 3D cone trajectory design incorporating the 3D golden angle was integrated into 4D combined angiography and perfusion using radial imaging and arterial spin labeling (CAPRIA) to achieve higher spatial resolution and sampling efficiency for both dynamic angiography and perfusion imaging with flexible spatiotemporal resolution. Numerical simulations and physical phantom scanning were used to optimize the cone design.

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In this paper, we present the results of the MitoEM challenge on mitochondria 3D instance segmentation from electron microscopy images, organized in conjunction with the IEEE-ISBI 2021 conference. Our benchmark dataset consists of two large-scale 3D volumes, one from human and one from rat cortex tissue, which are 1,986 times larger than previously used datasets. At the time of paper submission, 257 participants had registered for the challenge, 14 teams had submitted their results, and six teams participated in the challenge workshop.

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Cervical smear screening is an imaging-based cancer detection tool, which is of pivotal importance for the early-stage diagnosis. A computer-aided screening system can automatically find out if the scanned whole-slide images (WSI) with cervical cells are classified as "abnormal" or "normal", and then alert pathologists. It can significantly reduce the workload for human experts, and is therefore highly demanded in clinical practice.

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