Publications by authors named "Prosser J"

Article Synopsis
  • Two new strains of ammonia-oxidising archaea were isolated from acidic soils in the UK and China, showing over 99% genetic similarity but distinct physiological features.
  • Both strains, Nd1 and Nd2, are non-motile chemolithotrophs that oxidize ammonia to gain energy, but cannot use urea as an ammonia source.
  • The strains were classified into a new genus, with Nd1 and Nd2 designated as type strains for new species, alongside the proposal of a new family and order.
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Ecological theory predicts that organismal distribution and abundance depend on the ability to adapt to environmental change. It also predicts that eukaryotic specialists and generalists will dominate in extreme environments or following environmental change, respectively. This theory has attracted little attention in prokaryotes, especially in archaea, which drive major global biogeochemical cycles.

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Introduction: The combination of intermittent claudication (IC), cardiometabolic multimorbidity (CMM), and sarcopenia is associated with worse outcomes than IC alone. This study aimed to identify whether the completion of supervised exercise therapy (SET) attenuates these adverse outcomes in patients with combined IC, sarcopenia, and CMM.

Methods: This registry review included consecutive IC patients with concomitant CMM and sarcopenia, who were referred for SET from 2014 to 2017.

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Executive Summary: Microbes are all pervasive in their distribution and influence on the functioning and well-being of humans, life in general and the planet. Microbially-based technologies contribute hugely to the supply of important goods and services we depend upon, such as the provision of food, medicines and clean water. They also offer mechanisms and strategies to mitigate and solve a wide range of problems and crises facing humanity at all levels, including those encapsulated in the sustainable development goals (SDGs) formulated by the United Nations.

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Article Synopsis
  • A 17-year-old girl developed toxic epidermal necrolysis (TEN) after receiving iodine before thyroid surgery for Graves' disease, despite having stopped her methimazole medication over a month prior.
  • She had a complex medical history, including COVID-19 and several autoimmune conditions like type 1 diabetes and Addison's disease.
  • This case is notable as it may be the first reported instance of TEN in a pediatric patient linked to potassium iodide, emphasizing the need for careful medication management in patients with autoimmune disorders.
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Background: Guidelines recommend cardiovascular risk reduction and supervised exercise therapy as the first line of treatment in intermittent claudication, but implementation challenges and poor patient compliance lead to significant variation in management and therefore outcomes. The development of a precise risk stratification tool is proposed through a machine-learning algorithm that aims to provide personalized outcome predictions for different management strategies.

Methods: Feature selection was performed using the least absolute shrinkage and selection operator method.

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Article Synopsis
  • The study aimed to determine specific threshold values for obstructive apnea-hypopnea index (OAHI) and nadir oxygen saturation (NspO) in children with severe obstructive sleep apnea (OSA) to identify those needing preoperative echocardiography.
  • A retrospective review was conducted on children who had both echocardiography and polysomnography, focusing on OAHI > 10 or NspO < 80% as indicators of severe OSA, with various metrics used to analyze the data.
  • The results showed that while prepubertal children had low predictive ability for right heart strain (RHS), postpubertal children with OAHI > 55 and NspO < 69
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  • Machine learning applications in healthcare have potential benefits, but their real-world accuracy, especially for different patient groups, is still uncertain, prompting a community challenge focused on predicting all-cause mortality.
  • The challenge involved 345 participants forming 25 teams from across 10 countries, who created 25 models trained on a dataset of over 1.1 million patients, with the best model achieving a high performance score.
  • Analysis showed significant variability in model accuracy based on patient subpopulations, indicating both the possibilities and limitations of using AI in clinical settings.
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  • A study explored the feasibility of a 6-week high-intensity interval training (HIIT) program as an alternative to standard supervised exercise programs (SEPs) for patients with intermittent claudication (IC).
  • Out of 280 screened patients, 40 were recruited, and 31 (78%) completed the HIIT program, indicating high adherence and no serious adverse events.
  • Results showed improvements in maximum walking distance and physical health scores, suggesting that HIIT is a tolerable, potentially safe, and effective option for patients with IC, warranting further research.
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  • There is a lack of global agreement on using high-intensity interval training (HIIT) for patients with coronary artery disease (CAD) in cardiac rehabilitation programs.
  • The study involved a randomized controlled trial with 382 patients comparing low-volume HIIT and moderate-intensity steady-state (MISS) exercise over 8 weeks, showing that HIIT significantly improved cardiorespiratory fitness more than MISS.
  • Results indicated that low-volume HIIT is a safe, effective alternative to traditional exercise methods in cardiac rehabilitation for improving fitness in stable CAD patients.
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This article precedes a series of articles on the important questions, hypotheses and theories in microbial ecology. It considers why, as scientists, we ask questions and propose hypotheses and what makes them important, good or significant. Emphasis is placed on 'scientific' questions, the need for scientific aims and on possible reasons for, and inadequacy of aim-less studies and question free studies.

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Objective: This analysis investigates any potential differences in pulmonary function test (PFT) outcomes among pediatric patients with cystic fibrosis (CF) receiving both medical management (MM) and functional endoscopic sinus surgery (FESS) versus MM alone for CF exacerbation.

Study Design: Prospective cohort.

Setting: Pediatric tertiary care facility.

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  • Chronic pain and disability are common, long-term effects of blunt chest trauma, and this study aims to evaluate a new early exercise program to help manage these issues.
  • The trial will be conducted across five hospitals in the UK, comparing standard physiotherapy to physiotherapy plus an individualized exercise plan, with outcomes measured at three months post-injury.
  • The study has received ethical approval and intends to share results through journals and conferences to inform medical practice.
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  • Acute environmental changes lead to quick shifts in microbial communities, while ongoing disturbances tend to stabilize these communities into new, alternative states.
  • Research involving pristine and hydrocarbon-contaminated sediments shows that acute perturbations significantly alter community structure, while chronically polluted sediments maintain their original structure due to a historical legacy.
  • Despite these variations, both community types demonstrate functional resilience, effectively degrading hydrocarbons, indicating that the history of pollution affects how communities respond to environmental changes.
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Importance: Machine learning could be used to predict the likelihood of diagnosis and severity of illness. Lack of COVID-19 patient data has hindered the data science community in developing models to aid in the response to the pandemic.

Objectives: To describe the rapid development and evaluation of clinical algorithms to predict COVID-19 diagnosis and hospitalization using patient data by citizen scientists, provide an unbiased assessment of model performance, and benchmark model performance on subgroups.

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Cytomegalovirus (CMV) is a double-stranded DNA virus and a member of the herpesvirus family. It is the most common congenital viral infection. For symptomatic infections, symptoms can vary widely but tends to have a predilection for the central nervous system and for the reticuloendothelial system.

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PC945 is a novel antifungal triazole formulated for nebulized delivery to treat lung Aspergillus infections. Pharmacokinetic and safety profiles from nonclinical studies and clinical trials in healthy subjects, and subjects with mild asthma were characterized. Toxicokinetics were assessed following daily 2-hour inhalation for 14 days.

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Background: There remains variation in management of orbital complications of acute bacterial rhinosinusitis (ABRS); specifically, those subperiosteal abscesses that present without immediate surgical indication. Recent systematic reviews on management and proposed treatment algorithms are helpful but do not consider the financial implications for healthcare systems and patients.

Methods: A retrospective chart review of pediatric patients from a tertiary care children's hospital between 2002 and 2020 was performed, identifying patients via ICD coding corresponding to acute bacterial sinusitis and orbital involvement classified as Chandler 3 confirmed by contrasted computed tomography (CT).

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Investigation of niche specialization in microbial communities is important in assessing consequences of environmental change for ecosystem processes. Ammonia oxidizing bacteria (AOB) and archaea (AOA) present a convenient model for studying niche specialization. They coexist in most soils and effects of soil characteristics on their relative abundances have been studied extensively.

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Objective: The development of predictive models for clinical application requires the availability of electronic health record (EHR) data, which is complicated by patient privacy concerns. We showcase the "Model to Data" (MTD) approach as a new mechanism to make private clinical data available for the development of predictive models. Under this framework, we eliminate researchers' direct interaction with patient data by delivering containerized models to the EHR data.

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Article Synopsis
  • The conversion of tropical forests to oil palm plantations in Southeast Asia causes soil acidification due to intensive nitrogen use, affecting ammonia-oxidizing microorganisms that play a key role in nitrification.
  • Experimental studies show that forest soils, with neutral pH, have higher nitrification rates compared to acidic oil palm soils, and that acidification reduces ammonia oxidizer activity in forests but can be restored by liming in oil palm soils.
  • This research highlights the varying sensitivity of ammonia-oxidizing bacteria (AOB) and archaea (AOA) to pH changes, indicates AOB may serve as bioindicators for nitrification responses, and suggests that anthropogenic activities compromise the stability of nitrogen cycling processes in these ecosystems.
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Microbial ecology, the scientific study of interactions between natural microbial communities and their environments, has been facilitated by the application of molecular and 'omics'-based techniques that overcome some of the limitations of cultivation-based studies. This has increased emphasis on community ecology and 'microbiome' studies, but the majority address technical, rather than scientific challenges. Most are descriptive, do not address scientific aims or questions and are not designed to increase understanding or test hypotheses.

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