Publications by authors named "Prochazka J"

Article Synopsis
  • The cytokine TNF can lead to a type of cell death influenced by RIPK1, but this can be suppressed by two proteins, TANK and AZI2, which help regulate TBK1 kinase activation.
  • Mice lacking both TANK and AZI2 experience severe health issues like multi-organ inflammation and early death, which can be mitigated by disabling TNFR1 or using a modified RIPK1.
  • TANK and AZI2 work together in the TNF receptor signaling process, binding to different components at distinct times to maintain TBK1 activity and protect against excessive inflammation.
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Achondroplasia is the most common form of human dwarfism caused by mutations in the FGFR3 receptor tyrosine kinase. Current therapy begins at 2 years of age and improves longitudinal growth but does not address the cranial malformations including midface hypoplasia and foramen magnum stenosis, which lead to significant otolaryngeal and neurologic compromise. A recent clinical trial found partial restoration of cranial defects with therapy starting at 3 months of age, but results are still inconclusive.

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DDI2 is an aspartic protease that cleaves polyubiquitinated substrates. Upon proteotoxic stress, DDI2 activates the transcription factor TCF11/NRF1 (NFE2L1), crucial for maintaining proteostasis in mammalian cells, enabling the expression of rescue factors, including proteasome subunits. Here, we describe the consequences of DDI2 ablation and in cells.

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  • - Research on animal venoms involves various fields like biology, pharmacology, and bioinformatics, yet accessing the necessary tools and data can be difficult for nonexperts due to their scattered availability online.
  • - The article identifies and discusses key web resources and databases for venom research, compiling them into a comprehensive table found on the VenomZone website to aid scientists in their work.
  • - It also addresses the current challenges in the field, advocating for better standards, data sharing, and community collaboration to enhance the accessibility and effectiveness of venom research.
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Introduction: Depression therapy has been linked to negative effects on energy metabolism, which can be attributed to various factors, including an ongoing inflammatory process commonly seen in metabolic disorders. Unhealthy lifestyle choices of patients and the impact of antidepressants on body weight and lipid and glucose metabolism also contribute to these metabolic side effects. Although not as pronounced as other psychopharmaceuticals, the increasing use of antidepressants raises concerns about their potential impact on public health.

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  • Adar null mutant mouse embryos experience death due to abnormal activation of the interferon response driven by double-stranded RNA (dsRNA), while eliminating this response in Adar Mavs double mutants leads to early postnatal death.
  • In Adar Mavs mice, Protein kinase R (PKR) becomes mistakenly activated in the intestines, causing intestinal cell death and loss of villi, but adding an Eifak2 (Pkr) mutation restores these defects and enables survival.
  • Research shows that ADAR1 directly interacts with PKR to inhibit its activity, and while ADAR1 binding to dsRNA is necessary for this inhibition, changes in specific binding regions disrupt ADAR1's ability to control PKR,
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Mitochondrial oxidative phosphorylation (OXPHOS) fuels cellular ATP demands. OXPHOS defects lead to severe human disorders with unexplained tissue specific pathologies. Mitochondrial gene expression is essential for OXPHOS biogenesis since core subunits of the complexes are mitochondrial-encoded.

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Introduction: Fibroblast growth factor 20 (Fgf20), a member of the Fgf9 subfamily, was identified as an important regulator of bone differentiation and homeostasis processes. However, the role of Fgf20 in bone physiology has not been approached yet. Here we present a comprehensive bone phenotype analysis of mice with functional ablation of Fgf20.

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  • Research into the innate immune system's role in health and disease is growing, highlighting the need for suitable mouse models for reliable in vivo studies.
  • Genetic differences across mouse strains, like BALB/c and C57BL/6, significantly influence how the diseases manifest, particularly relating to immune responses.
  • A study of chronic multifocal osteomyelitis (CMO) in various strains revealed that the genetic background affects disease severity, immune cell activity, and the overall inflammation response.
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  • Methyl-d-aspartate receptors (NMDARs) are crucial for brain functions like synaptic transmission and plasticity, and variants in their genes are linked to neurodevelopmental disorders, but the exact mechanisms remain unclear.
  • Researchers developed a transgenic mouse model with a specific variant (GluN2B(L825V)) found in a patient with intellectual disability and autism to study its effects on brain function.
  • Findings showed that the variant led to lower NMDAR currents and behavior issues like reduced activity and anxiety, suggesting that this mouse model could help in understanding the neurodevelopmental impacts of the variant.
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  • - Diamond-Blackfan anemia (DBA) is a rare genetic disorder caused by issues with the bone marrow's ability to produce red blood cells, resulting in severe anemia and physical abnormalities, primarily due to mutations in ribosomal protein genes like RPS19.
  • - Current treatments include glucocorticosteroids, blood transfusions, and hematopoietic stem cell transplantation (HSCT), with HSCT being the only curative but challenging option due to donor and immunological issues.
  • - Gene therapy, particularly through methods like lentiviral vectors and CRISPR/Cas9 technology, is being explored as a promising curative approach for DBA, potentially transforming treatment options for affected individuals.
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T cells are pivotal in the adaptive immune defense, necessitating a delicate balance between robust response against infections and self-tolerance. Their activation involves intricate cross-talk among signaling pathways triggered by the T-cell antigen receptors (TCR) and co-stimulatory or inhibitory receptors. The molecular regulation of these complex signaling networks is still incompletely understood.

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  • Canonical RNA interference (RNAi) is a process where small interfering RNAs (siRNAs) guide the breakdown of specific mRNAs, playing roles in gene regulation and defense mechanisms.
  • In mammals, RNAi is typically limited due to Dicer producing microRNAs instead, but a specific variant (ΔHEL1) allows for RNAi in mouse oocytes, and mutations to this variant can lead to severe developmental issues.
  • Research on Dicer mice shows they can exhibit increased siRNA levels without significant changes to their microRNA profiles, suggesting the possibility of using these mice to study the overall impacts and potential of RNAi in living organisms.
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Intratumoral tertiary lymphoid structures (TLSs) have been associated with improved outcome in various cohorts of patients with cancer, reflecting their contribution to the development of tumor-targeting immunity. Here, we demonstrate that high-grade serous ovarian carcinoma (HGSOC) contains distinct immune aggregates with varying degrees of organization and maturation. Specifically, mature TLSs (mTLS) as forming only in 16% of HGSOCs with relatively elevated tumor mutational burden (TMB) are associated with an increased intratumoral density of CD8 effector T (T) cells and TIM3PD1, hence poorly immune checkpoint inhibitor (ICI)-sensitive, CD8 T cells.

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CDK13-related disorder, also known as congenital heart defects, dysmorphic facial features and intellectual developmental disorder (CHDFIDD) is associated with mutations in the CDK13 gene encoding transcription-regulating cyclin-dependent kinase 13 (CDK13). Here, we focused on the development of craniofacial structures and analyzed early embryonic stages in CHDFIDD mouse models, with one model comprising a hypomorphic mutation in Cdk13 and exhibiting cleft lip/palate, and another model comprising knockout of Cdk13, featuring a stronger phenotype including midfacial cleft. Cdk13 was found to be physiologically expressed at high levels in the mouse embryonic craniofacial structures, namely in the forebrain, nasal epithelium and maxillary mesenchyme.

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The skeletal system mirrors several processes in the vertebrate body that impact developmental malfunctions, hormonal disbalance, malfunction of calcium metabolism and turn over, and inflammation processes such as arthrosis. X-ray micro computed tomography is a useful tool for 3D in situ evaluation of the skeletal system in a time-related manner, but results depend highly on resolution. Here, we provide the methodological background for a graduated evaluation from whole-body analysis of skeletal morphology and mineralization to high-resolution analysis of femoral and vertebral microstructure.

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Ameloblastin is a protein in biomineralization of tooth enamel. However recent results indicate that this is probably not its only role in an organism. Enamel matrix formation represents a complex process enabled via specific crosslinking of two proteins - the most abundant amelogenin and the ameloblastin (AMBN).

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Background: Amplification of HER2, a receptor tyrosine kinase and a breast cancer-linked oncogene, is associated with aggressive disease. HER2 protein is localised mostly at the cell membrane, but a fraction translocates to mitochondria. Whether and how mitochondrial HER2 contributes to tumorigenicity is currently unknown.

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Ameloblasts are specialized epithelial cells in the jaw that have an indispensable role in tooth enamel formation-amelogenesis. Amelogenesis depends on multiple ameloblast-derived proteins that function as a scaffold for hydroxyapatite crystals. The loss of function of ameloblast-derived proteins results in a group of rare congenital disorders called amelogenesis imperfecta.

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Pathogenic variants in the highly conserved OVOL2 promoter region cause posterior polymorphous corneal dystrophy (PPCD) 1 by inducing an ectopic expression of the endothelial OVOL2 mRNA. Here we produced an allelic series of Ovol2 promoter mutations in the mouse model including the heterozygous c.-307T>C variant (RefSeq NM_021220.

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This manuscript describes a battery of behavioral tests available to characterize Angelman syndrome (AS)-like phenotypes in an established murine model of AS. We use the rotarod learning paradigm, detailed gait analysis, and nest building test to detect and characterize animal motor impairments. We test animal emotionality in the open field and elevated plus maze tests, as well as the affect in the tail suspension test.

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Article Synopsis
  • Obesity can harm bones and fat handling in both mice and people.
  • Omega-3 fatty acids may help improve how the body manages sugar and supports healthy bones in those with obesity.
  • A study found that mice on a high-fat diet supplemented with omega-3s had better bone health and less fat in their bones compared to those only on the high-fat diet.
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Mitochondria are central for cellular metabolism and energy supply. Barth syndrome (BTHS) is a severe disorder, due to dysfunction of the mitochondrial cardiolipin acyl transferase tafazzin. Altered cardiolipin remodeling affects mitochondrial inner membrane organization and function of membrane proteins such as transporters and the oxidative phosphorylation (OXPHOS) system.

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  • Cardiovascular diseases are a major health problem that cause many deaths worldwide, and scientists use mice to study these diseases more easily.
  • The International Mouse Phenotyping Consortium (IMPC) is working to understand how different genes affect the heart by creating special mice that are missing specific genes and testing them using advanced methods.
  • This research is helping to link genes that affect metabolism with heart health, offering new chances to discover what causes heart diseases.
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