Publications by authors named "Pratishtha Varshney"

Advancements in CRISPR technology, particularly the development of base editors, revolutionize genetic variant research. When combined with model organisms like zebrafish, base editors significantly accelerate and refine in vivo analysis of genetic variations. However, base editors are restricted by protospacer adjacent motif (PAM) sequences and specific editing windows, hindering their applicability to a broad spectrum of genetic variants.

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Article Synopsis
  • Biallelic variants in the OGDHL gene, linked to various neurological disorders, were investigated to better understand their gene-disease relationship through a new patient cohort and various genetic analyses.
  • Researchers utilized global sequencing data and zebrafish models to explore the functional effects of these variants, revealing significant clinical variability among affected individuals.
  • Findings indicated that OGDHL is not a straightforward Mendelian gene due to the presence of alternative allele interactions and compensatory mechanisms with related genes, suggesting a more complex role in neurodevelopmental disorders.
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Purpose: Pathogenic variants in Lysyl-tRNA synthetase 1 (KARS1) have increasingly been recognized as a cause of early-onset complex neurological phenotypes. To advance the timely diagnosis of KARS1-related disorders, we sought to delineate its phenotype and generate a disease model to understand its function in vivo.

Methods: Through international collaboration, we identified 22 affected individuals from 16 unrelated families harboring biallelic likely pathogenic or pathogenic in KARS1 variants.

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Deafness, the most frequent sensory deficit in humans, is extremely heterogeneous with hundreds of genes involved. Clinical and genetic analyses of an extended consanguineous family with pre-lingual, moderate-to-profound autosomal recessive sensorineural hearing loss, allowed us to identify CLRN2, encoding a tetraspan protein, as a new deafness gene. Homozygosity mapping followed by exome sequencing identified a 14.

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The study of model organisms has revolutionized our understanding of the mechanisms underlying normal development, adult homeostasis, and human disease. Much of what we know about gene function in model organisms (and its application to humans) has come from gene knockouts: the ability to show analogous phenotypes upon gene inactivation in animal models. The zebrafish () has become a popular model organism for many reasons, including the fact that it is amenable to various forms of genetic manipulation.

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