Utilizing Deep Learning Algorithms for Signal Processing in Electrochemical Biosensors: From Data Augmentation to Detection and Quantification of Chemicals of Interest.

Nanomaterial-based aptasensors serve as useful instruments for detecting small biological entities. This work utilizes data gathered from three electrochemical aptamer-based sensors varying in receptors, analytes of interest, and lengths of signals. Our ultimate objective was the automatic detection and quantification of target analytes from a segment of the signal recorded by these sensors.

Photocaging of Pyridinylimidazole-Based Covalent JNK3 Inhibitors Affords Spatiotemporal Control of the Binding Affinity in Live Cells.

The concept of photocaging represents a promising approach to acquire spatiotemporal control over molecular bioactivity. To apply this strategy to pyridinylimidazole-based covalent JNK3 inhibitors, we used acrylamido--(4-((4-(4-(4-fluorophenyl)-1-methyl-2-(methylthio)-1-imidazol-5-yl)pyridin-2-yl)amino)phenyl)benzamide () as a lead compound to design novel covalent inhibitors of JNK3 by modifying the amide bond moiety in the linker. The newly synthesized inhibitors demonstrated IC values in the low double-digit nanomolar range in a radiometric kinase assay.

Anomaly Detection for Sensor Signals Utilizing Deep Learning Autoencoder-Based Neural Networks.

Anomaly detection is a significant task in sensors' signal processing since interpreting an abnormal signal can lead to making a high-risk decision in terms of sensors' applications. Deep learning algorithms are effective tools for anomaly detection due to their capability to address imbalanced datasets. In this study, we took a semi-supervised learning approach, utilizing normal data for training the deep learning neural networks, in order to address the diverse and unknown features of anomalies.

Fiber-based food packaging materials in view of bacterial growth and survival capacities.

Understanding interactions of bacteria with fiber-based packaging materials is fundamental for appropriate food packaging. We propose a laboratory model to evaluate microbial growth and survival in liquid media solely consisting of packaging materials with different fiber types. We evaluated food contaminating species (, , ), two packaging material isolates and bacterial endospores for their growth abilities.

Predicting Analyte Concentrations from Electrochemical Aptasensor Signals Using LSTM Recurrent Networks.

Nanomaterial-based aptasensors are useful devices capable of detecting small biological species. Determining suitable signal processing methods can improve the identification and quantification of target analytes detected by the biosensor and consequently improve the biosensor's performance. In this work, we propose a data augmentation method to overcome the insufficient amount of available original data and long short-term memory (LSTM) to automatically predict the analyte concentration from part of a signal registered by three electrochemical aptasensors, with differences in bioreceptors, analytes, and the signals' lengths for specific concentrations.

Synthesis of encapsulated ZnO nanowires provide low impedance alternatives for microelectrodes.

Microelectrodes are commonly used in electrochemical analysis and biological sensing applications owing to their miniaturised dimensions. It is often desirable to improve the performance of microelectrodes by reducing their electrochemical impedance for increasing the signal-to-noise of the recorded signals. One successful route is to incorporate nanomaterials directly onto microelectrodes; however, it is essential that these fabrication routes are simple and repeatable.

Insect odorant receptor-based biosensors: Current status and prospects.

Whilst the senses of vision and hearing have been successfully automated and miniaturized in portable formats (e.g. smart phone), this is yet to be achieved with the sense of smell.

Comparison of Duplex and Quadruplex Folding Structure Adenosine Aptamers for Carbon Nanotube Field Effect Transistor Aptasensors.

Carbon nanotube field effect transistor (CNT FET) aptasensors have been investigated for the detection of adenosine using two different aptamer sequences, a 35-mer and a 27-mer. We found limits of detection for adenosine of 100 pM and 320 nM for the 35-mer and 27-mer aptamers, with dissociation constants of 1.2 nM and 160 nM, respectively.

Label-Free Investigations on the G Protein Dependent Signaling Pathways of Histamine Receptors.

G protein activation represents an early key event in the complex GPCR signal transduction process and is usually studied by label-dependent methods targeting specific molecular events. However, the constrained environment of such "invasive" techniques could interfere with biological processes. Although histamine receptors (HRs) represent (evolving) drug targets, their signal transduction is not fully understood.

Investigation of Fractal Carbon Nanotube Networks for Biophilic Neural Sensing Applications.

We propose a carbon-nanotube-based neural sensor designed to exploit the electrical sensitivity of an inhomogeneous fractal network of conducting channels. This network forms the active layer of a multi-electrode field effect transistor that in future applications will be gated by the electrical potential associated with neuronal signals. Using a combination of simulated and fabricated networks, we show that thin films of randomly-arranged carbon nanotubes (CNTs) self-assemble into a network featuring statistical fractal characteristics.

Discovery of a G Protein-Biased Radioligand for the Histamine H Receptor with Reversible Binding Properties.

Currently employed histamine H receptor (HR) radioligands possess several drawbacks, for example, high non-specificity, insurmountable binding, or short half-life. We report the synthesis and the chemical and pharmacological characterization of the highly stable carbamoylguanidine-type radioligand [H]UR-KAT479 ([H]), a subtype selective histamine H receptor G protein-biased agonist. [H] was characterized by saturation, kinetic, and competition binding assays at the human, guinea pig, and mouse H receptors (co-)expressed in HEK293(T) cells.

Directed self-assembly of peptide-diketopyrrolopyrrole conjugates - a platform for bio-organic thin film preparation.

Increased water solubility and long-range intermolecular ordering have been introduced into the fluorescent organic molecule thiophene-diketopyrrolopyrrole (TDPP) via its conjugation to the octapeptide HEFISTAH, which is derived from the protein-protein β-interface of the homo-tetramer protein diaminopimelate decarboxylase. The octapeptide, and its TDPP mono- and cross-linked conjugates were synthesised using 9-fluorenylmethoxycarbonyl (Fmoc) based solid-phase peptide synthesis (SPPS). Unlike the unmodified peptide, the resulting mono-linked and cross-linked peptides showed a fibrous morphology and formed hydrogels at 4 wt% in water at neutral pH, but failed to assemble at pH 2 and pH 9.

Improved uniaxial dielectric properties in aligned diisopropylammonium bromide (DIPAB) doped poly(vinylidene difluoride) (PVDF) nanofibers.

Diisopropylammonium bromide (DIPAB) doped poly(vinylidene difluoride) (PVDF) nanofibers (5, 10 and 24 wt% DIPAB doping) with improved and tunable dielectric properties were synthesised electrospinning. DIPAB nanoparticles were grown during the nanofiber formation. X-Ray diffraction (XRD) patterns and Fourier transform infrared spectroscopy (FTIR) proved that electrospinning of DIPAB doped PVDF solutions led to the formation of a highly electro-active β-phase in the nanofibers.

Biosensing with Insect Odorant Receptor Nanodiscs and Carbon Nanotube Field-Effect Transistors.

Insect odorant receptors have been reconstituted into lipid nanodiscs and tethered to carbon nanotube field-effect transistors to function as a biosensor. Here, four different insect odorant receptors (ORs) from Drosophila melanogaster (DmelOR10a, DmelOR22a, DmelOR35a, and DmelOR71a) were expressed in Sf9 cells, purified, and reconstituted into lipid nanodiscs. We have demonstrated that each of these ORs produce a selective and highly sensitive electrical response to their respective positive ligands, methyl salicylate, methyl hexanoate, trans-2-hexen-1-al, and 4-ethylguaiacol, with limits of detection in the low femtomolar range.

Data on liquid gated CNT network FETs on flexible substrates.

This article presents the raw and analyzed data from a set of experiments performed to study the role of junctions on the electrostatic gating of carbon nanotube (CNT) network field effect transistor (FET) aptasensors. It consists of the raw data used for the calculation of junction and bundle densities and describes the calculation of metallic content of the bundles. In addition, the data set consists of the electrical measurement data in a liquid gated environment for 119 different devices with four different CNT densities and summarizes their electrical properties.

Metallic-semiconducting junctions create sensing hot-spots in carbon nanotube FET aptasensors near percolation.

Easily fabricated random network carbon nanotube field-effect transistors (CNT-FETs) have benefitted from improved separation techniques to deliver CNTs with current formulations providing at least 99% semiconducting tube content. Amongst the most promising applications of this device platform are electronic biosensors, where the network conduction is affected through tethered probes such as aptamers which act as molecular scale electrostatic gates. However, the prevailing assumption that these biosensor devices would be optimized if metallic tubes were entirely eliminated has not been examined.

Structural basis of ligand binding modes at the neuropeptide Y Y receptor.

Neuropeptide Y (NPY) receptors belong to the G-protein-coupled receptor superfamily and have important roles in food intake, anxiety and cancer biology . The NPY-Y receptor system has emerged as one of the most complex networks with three peptide ligands (NPY, peptide YY and pancreatic polypeptide) binding to four receptors in most mammals, namely the Y, Y, Y and Y receptors, with different affinity and selectivity . NPY is the most powerful stimulant of food intake and this effect is primarily mediated by the Y receptor (YR) .

Realizing field-dependent conduction in ZnO nanowires without annealing.

We report on the low-temperature fabrication of field-effect transistors by bridging pre-patterned electrodes using ZnO nanowires grown in situ, which operate without requiring post-growth processing or annealing. The devices show good performance using as-grown nanowires, with on-off ratios of 10 and threshold voltages of 2 V. Electron microscopy shows the field-dependent nanowires hierarchically nucleate from larger ZnO nanorods, and both are oriented along a common c-axis.

Label-free versus conventional cellular assays: Functional investigations on the human histamine H receptor.

A set of histamine H receptor (HR) agonists and antagonists was characterized in functional assays, using dynamic mass redistribution (DMR), electric cell-substrate impedance sensing (ECIS) and various signaling pathway specific readouts (Fura-2 and aequorin calcium assays, arrestin recruitment (luciferase fragment complementation) assay, luciferase gene reporter assay). Data were gained from genetically engineered HEK293T cells and compared with reference data from GTPase assays and radioligand binding. Histamine and the other HR agonists gave different assay-related pEC values, however, the order of potency was maintained.

Psychophysical Vision Simulation of Diffractive Bifocal and Trifocal Intraocular Lenses.

Purpose: The visual performance of monofocal, bifocal, and trifocal intraocular lenses was evaluated by human individuals using a vision simulator device. This allowed investigation of the visual impression after cataract surgery, without the need actually to implant the lenses.

Methods: The randomized, double-masked, three-way cross-over study was conducted on 60 healthy male and female subjects aged between 18 and 35 years.

Electrostatic gating in carbon nanotube aptasensors.

Synthetic DNA aptamer receptors could boost the prospects of carbon nanotube (CNT)-based electronic biosensors if signal transduction can be understood and engineered. Here, we report CNT aptasensors for potassium ions that clearly demonstrate aptamer-induced electrostatic gating of electronic conduction. The CNT network devices were fabricated on flexible substrates via a facile solution processing route and non-covalently functionalised with potassium binding aptamers.

Label-free analysis of GPCR-stimulation: The critical impact of cell adhesion.

Label-free cell-based assays have been attracting growing attention in drug research. Optical approaches based on evanescent electric fields (e.g.

The immunology of fibrosis: innate and adaptive responses.

Fibrosis is an important health problem, and its pathogenetic principles are still largely unknown. It can develop either spontaneously, or, more frequently, as a consequence of various underlying diseases. Irrespective of the primary cause, however, fibrotic tissue is always infiltrated by mononuclear immune cells.

Direct measurement of charge transport through helical poly(ethyl propiolate) nanorods wired into gaps in single walled carbon nanotubes.

We report the direct measurement of electrical transport through rod-like polymer molecules, of poly(ethyl propiolate) (PEP), utilizing single walled carbon nanotubes (SWNTs) as electrodes. The electrical properties of the devices were measured (i) before cutting a SWNT, (ii) when a SWNT was cut and (iii) after PEP deposition into the nanoscale gap in a cut SWNT. The gate-dependent electrical properties showed a reduction in current from I(on) = 2.