Publications by authors named "Pilar Lopez-Ubeda"

Background And Objective: Colorectal cancer is one of the major causes of cancer death worldwide. Essential for prognosis and treatment planning, TNM staging offers critical insights into the advancement of colorectal cancer. However, manual TNM staging from colon magnetic resonance imaging (MRI) is a laborious and error prone process.

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Objective: The ACR Thyroid Imaging, Reporting, and Data System (TI-RADS) uses a score based on ultrasound (US) imaging to stratify the risk of nodule malignancy and recommend appropriate follow-up. This study aims to analyze US reports and explore how Natural Language Processing (NLP) leveraging Transformers models can classify ACR TI-RADS from text reports using the description of thyroid nodule features.

Materials And Methods: This retrospective study evaluated 16,847 thyroid-free text reports from our institution.

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In this letter to the editor, authors highlight the key role of data labeling in training AI models for medical imaging, discussing the complexities, resource demands, costs, and the relevance of quality control in the labeling process including the potential and limitations of AI tools for automated labeling. The article underlines that labeling quality is essential for the accuracy of AI models and the safety of their clinical applications, highlighting the legal responsibilities of labelers in cases where improper labeling leads to AI errors.

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Background: The American Society of Spine Radiology (ASSR), American Society of Neuroradiology (ASNR), and North American Spine Society (NASS) published a consensus paper with recommendations for lumbar disc nomenclature reports in 2014. We aimed to evaluate the degree of adoption in our radiology department of the ASSR, ASNR, and NASS 2.0 lumbar spine consensus paper using natural language processing (NLP).

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Rationale And Objectives: Large Language Models can capture the context of radiological reports, offering high accuracy in detecting unexpected findings. We aim to fine-tune a Robustly Optimized BERT Pretraining Approach (RoBERTa) model for the automatic detection of unexpected findings in radiology reports to assist radiologists in this relevant task. Second, we compared the performance of RoBERTa with classical convolutional neural network (CNN) and with GPT4 for this goal.

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Background And Objectives: In the last decade, there has been a growing interest in applying artificial intelligence (AI) systems to breast cancer assessment, including breast density evaluation. However, few models have been developed to integrate textual mammographic reports and mammographic images. Our aims are (1) to generate a natural language processing (NLP)-based AI system, (2) to evaluate an external image-based software, and (3) to develop a multimodal system, using the late fusion approach, by integrating image and text inferences for the automatic classification of breast density according to the American College of Radiology (ACR) guidelines in mammograms and radiological reports.

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This paper presents the implementation of two automated text classification systems for prostate cancer findings based on the PI-RADS criteria. Specifically, a traditional machine learning model using XGBoost and a language model-based approach using RoBERTa were employed. The study focused on Spanish-language radiological MRI prostate reports, which has not been explored before.

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Despite not being the first imaging modality for thyroid gland assessment, Magnetic Resonance Imaging (MRI), thanks to its optimal tissue contrast and spatial resolution, has provided some advancements in detecting and characterizing thyroid abnormalities. Recent research has been focused on improving MRI sequences and employing advanced techniques for a more comprehensive understanding of thyroid pathology. Although not yet standard practice, advanced MRI sequences have shown high accuracy in preliminary studies, correlating well with histopathological results.

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Objectives: This study addresses the critical need for accurate summarization in radiology by comparing various Large Language Model (LLM)-based approaches for automatic summary generation. With the increasing volume of patient information, accurately and concisely conveying radiological findings becomes crucial for effective clinical decision-making. Minor inaccuracies in summaries can lead to significant consequences, highlighting the need for reliable automated summarization tools.

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The integration of AI in radiology raises significant legal questions about responsibility for errors. Radiologists fear AI may introduce new legal challenges, despite its potential to enhance diagnostic accuracy. AI tools, even those approved by regulatory bodies like the FDA or CE, are not perfect, posing a risk of failure.

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Purpose: The conclusion section of a radiology report is crucial for summarizing the primary radiological findings in natural language and essential for communicating results to clinicians. However, creating these summaries is time-consuming, repetitive, and prone to variability and errors among different radiologists. To address these issues, we evaluated a fine-tuned Text-To-Text Transfer Transformer (T5) model for abstractive summarization to automatically generate conclusions for neuroradiology MRI reports in a low-resource language.

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Artificial Intelligence (AI) applied to radiology is so vast that it provides applications ranging from becoming a complete replacement for radiologists (a potential threat) to an efficient paperwork-saving time assistant (an evident strength). Nowadays, there are AI applications developed to facilitate the diagnostic process of radiologists without directly influencing (or replacing) the proper diagnostic decision step. These tools may help to reduce administrative workload, in different scenarios ranging from assisting in scheduling, study prioritization, or report communication, to helping with patient follow-up, including recommending additional exams.

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Objectives: The differential between high-grade glioma (HGG) and metastasis remains challenging in common radiological practice. We compare different natural language processing (NLP)-based deep learning models to assist radiologists based on data contained in radiology reports.

Methods: This retrospective study included 185 MRI reports between 2010 and 2022 from two different institutions.

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This paper presents a new corpus of radiology medical reports written in Spanish and labeled with ICD-10. CARES (Corpus of Anonymised Radiological Evidences in Spanish) is a high-quality corpus manually labeled and reviewed by radiologists that is freely available for the research community on HuggingFace. These types of resources are essential for developing automatic text classification tools as they are necessary for training and tuning computational systems.

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Radiological reports are a valuable source of information used to guide clinical care and support research. Organizing and managing this content, however, frequently requires several manual curations because of the more common unstructured nature of the reports. However, manual review of these reports for clinical knowledge extraction is costly and time-consuming.

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Natural language processing (NLP) plays a key role in advancing health care, being key to extracting structured information from electronic health reports. In the last decade, several advances in the field of pathology have been derived from the application of NLP to pathology reports. Herein, a comprehensive review of the most used NLP methods for extracting, coding, and organizing information from pathology reports is presented, including how the development of tools is used to improve workflow.

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Background: Natural language processing (NLP) and text mining technologies for the extraction and indexing of chemical and drug entities are key to improving the access and integration of information from unstructured data such as biomedical literature.

Methods: In this paper we evaluate two important tasks in NLP: the named entity recognition (NER) and Entity indexing using the SNOMED-CT terminology. For this purpose, we propose a combination of word embeddings in order to improve the results obtained in the PharmaCoNER challenge.

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Transfer learning has demonstrated its potential in natural language processing tasks, where models have been pre-trained on large corpora and then tuned to specific tasks. We applied pre-trained transfer models to a Spanish biomedical document classification task. The main goal is to analyze the performance of text classification by clinical specialties using state-of-the-art language models for Spanish, and compared them with the results using corresponding models in English and with the most important pre-trained model for the biomedical domain.

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Background: Controlled vocabularies are fundamental resources for information extraction from clinical texts using natural language processing (NLP). Standard language resources available in the healthcare domain such as the UMLS metathesaurus or SNOMED CT are widely used for this purpose, but with limitations such as lexical ambiguity of clinical terms. However, most of them are unambiguous within text limited to a given clinical specialty.

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