Publications by authors named "Phillip I Bird"

Article Synopsis
  • The CRISPR-Cas9 genome editing system is utilized to create mutations in specific genes, leading to the loss of functional proteins.
  • A transgenic zebrafish model for α1-antitrypsin deficiency (AATD) exhibits a unique phenotype, lacking the typical liver accumulation of misfolded protein seen in humans and mice.
  • The study highlights the use of CRISPR-Cas9 to create mutant zebrafish targeting the atf6a and man1b1 genes, which are suspected to play a role in processing misfolded α1-antitrypsin in the liver.
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Individuals homozygous for the Pi*Z allele of SERPINA1 (ZAAT) are susceptible to lung disease due to insufficient α1-antitrypsin secretion into the circulation and may develop liver disease due to compromised protein folding that leads to inclusion body formation in the endoplasmic reticulum (ER) of hepatocytes. Transgenic zebrafish expressing human ZAAT show no signs of hepatic accumulation despite displaying serum insufficiency, suggesting the defect in ZAAT secretion occurs independently of its tendency to form inclusion bodies. In this study, proteomic, transcriptomic, and biochemical analysis provided evidence of suppressed Srebp2-mediated cholesterol biosynthesis in the liver of ZAAT-expressing zebrafish.

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Granzyme K (GzmK) is a tryptic member of the granzyme family of chymotrypsin-like serine proteases produced by cells of the immune system. Previous studies have indicated that GzmK activates protease-activated receptor 1 (PAR1) enhancing activation of monocytes and wound healing in endothelial cells. Here, we show using peptides and full length proteins that GzmK and, to a lesser extent the related protease GzmA, are capable of activating PAR1 and PAR2.

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To control infections phagocytes can directly kill invading microbes. Macrophage-expressed gene 1 (Mpeg1), a pore-forming protein sometimes known as perforin-2, is reported to be essential for bacterial killing following phagocytosis. Mice homozygous for the mutant allele Mpeg1 succumb to bacterial infection and exhibit deficiencies in bacterial killing in vitro.

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Article Synopsis
  • Granzyme A (GZMA) is a protease secreted by cytotoxic lymphocytes, and research on mice with mixed genetic backgrounds has helped clarify its role, specifically how it is affected by genetic variations between C57BL/6J and C57BL/6N strains.
  • Mice with a C57BL/6N background showed significant improvements in chikungunya viral arthritis, linking this positive effect to the presence of specific genetic factors rather than the expression of GZMA.
  • Analyzing data from the Sequence Read Archive uncovered inconsistencies in the genetic background of many studies using C57BL/6J mice, suggesting that these background issues could skew results in various research areas.
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Recent findings suggest that the serine protease Granzyme K (GzmK) may act as a proinflammatory mediator. However, its role in sepsis is unknown. Here we aim to understand the role of GzmK in a mouse model of bacterial sepsis and compare it to the biological relevance of Granzyme A (GzmA).

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Objectives: Complete deficiency of the serine protease inhibitor gene, SERPINB6, is responsible for autosomal-recessive, nonsyndromic sensorineural hearing loss in humans. A mouse model of this deafness gene identifies Serpinb6a expression in the neurosensory epithelium and fibrocytes of the cochlea. Homozygous Serpinb6a mutant mice display an exaggerated hearing loss after exposure to moderate acoustic trauma.

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Article Synopsis
  • - Peritonitis can lead to sepsis, a severe inflammatory condition, and this study investigates the role of Granzyme A (GzmA), a protein produced by immune cells, in this process and its potential as a therapeutic target.
  • - The research involved analyzing GzmA levels in patients with peritonitis and using mice models to study the effects of GzmA deficiency and inhibition on survival and inflammation during sepsis.
  • - The results showed that higher GzmA levels are linked to worse outcomes in patients and that inhibiting GzmA in mice led to improved survival rates, suggesting GzmA contributes to inflammatory responses but does not affect bacterial control.
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Article Synopsis
  • Inactivating mutations in the SERPINB6 gene lead to progressive hearing loss in humans, particularly starting in early adulthood (known as DFNB91).
  • Previous studies have found that C57BL/6J mice, which lack the related gene Serpinb6a, also experience early and progressive hearing loss due to the presence of another mutation affecting hearing.
  • When Serpinb6a mutations are introduced to a different mouse strain (CBA/CaH) without the additional hearing loss mutation, the onset of hearing loss is significantly delayed, suggesting Serpinb6 plays a crucial role in protecting hair cells from damage and supporting hearing function.
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  • The inflammatory immune response can contribute to the development of colorectal cancer (CRC) if not properly regulated.
  • A study using transcriptomics analysis found a significant connection between inflammation and the expression of granzyme A (GzmA) in human CRC.
  • In mouse models, inhibiting GzmA reduced gut inflammation and prevented CRC, highlighting its role in promoting cancer through mechanisms involving NF-κB and STAT3 activation, suggesting GzmA could be a potential therapeutic target for CRC.
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Natural killer (NK) cells are key innate immunity effectors that combat viral infections and control several cancer types. For their immune function, human NK cells rely largely on five different cytotoxic proteases, called granzymes (A/B/H/K/M). Granzyme B (GrB) initiates at least three distinct cell death pathways, but key aspects of its function remain unexplored because selective probes that detect its activity are currently lacking.

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Cytotoxic T-lymphocytes (CTLs) and natural killer cells (NKs) kill compromised cells to defend against tumor and viral infections. Both effector cell types use multiple strategies to induce target cell death including Fas/CD95 activation and the release of perforin and a group of lymphocyte granule serine proteases called granzymes. Granzymes have relatively broad and overlapping substrate specificities and may hydrolyze a wide range of peptidic epitopes; it is therefore challenging to identify their natural and synthetic substrates and to distinguish their localization and functions.

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Granzyme A (GzmA) is secreted by cytotoxic lymphocytes and has traditionally been viewed as a mediator of cell death. However, a growing body of data suggests the physiological role of GzmA is promotion of inflammation. Here, we show that GzmA is significantly elevated in the sera of chikungunya virus (CHIKV) patients and that GzmA levels correlated with viral loads and disease scores in these patients.

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Article Synopsis
  • SerpinB1 is linked to T cells that produce IL-17 and is significantly increased in certain effector CD4 cells during experimental autoimmune encephalomyelitis (EAE).
  • Mice show resistance to EAE despite normal T cell activation due to a low number of T helper cells producing multiple cytokines like IFNγ, GM-CSF, and IL-17.
  • Rapidly proliferating CD4 cells expressing CXCR6 and various cytolytic proteins contribute to EAE's progression, as shown by the reversal of symptoms with anti-CXCR6 treatment or deletion.
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Macrophage-expressed gene 1 (MPEG1/Perforin-2) is a perforin-like protein that functions within the phagolysosome to damage engulfed microbes. MPEG1 is thought to form pores in target membranes, however, its mode of action remains unknown. We use cryo-Electron Microscopy (cryo-EM) to determine the 2.

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Article Synopsis
  • * The study highlights that protease inhibitors Serpinb1a and Serpinb6a help keep monocytes and neutrophils alive during both normal and inflammatory conditions by inhibiting an enzyme called cathepsin G (CatG).
  • * It was found that while CatG can activate gasdermin D (GSDMD) to trigger a type of cell death called pyroptosis, deleting GSDMD did not prevent neutrophil death in mice lacking the protease inhibitors, indicating that these inhibitors are crucial for regulating inflammation and cell
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Article Synopsis
  • In human α1-antitrypsin deficiency, individuals with the Z mutation in the SERPINA1 gene have low levels of α1-antitrypsin, leading to a higher risk of developing emphysema and liver damage due to protein misfolding.
  • Researchers created transgenic zebrafish that express either the normal or Z mutant form of α1-antitrypsin to study the effects of this deficiency.
  • The zebrafish with the Z mutant showed about 80% less α1-antitrypsin in their bloodstream and signs of liver stress, but did not accumulate the protein in liver cells, making them a potential model for further research on this condition.
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Granzyme K (GzmK), traditionally described as a pro-apoptotic, granule-secreted serine protease, has been proposed to promote inflammation. Found at low levels in the plasma of healthy individuals, GzmK is markedly elevated in response to sepsis and infection. In this study we investigated the role of GzmK in inflammation and remodeling in response to thermal injury.

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Granzyme A is a protease implicated in the degradation of intracellular DNA. Nucleotide complexes are known triggers of systemic autoimmunity, but a role in organ-specific autoimmune disease has not been demonstrated. To investigate whether such a mechanism could be an endogenous trigger for autoimmunity, we examined the impact of granzyme A deficiency in the NOD mouse model of autoimmune diabetes.

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Intracellular serpins are proposed to inactivate proteases released from lysosome-related organelles into the host cell interior, preventing cell death. Serpinb9 opposes the immune cytotoxic protease, granzyme B, and in a number of settings protects cells against granzyme B-mediated cell death. Using a knockout mouse line engineered to express green fluorescent protein under the serpbinb9 promoter, we demonstrate that serpinb9 is vital for host survival during Ectromelia virus infection by maintaining both mature natural killer NK) cells, and activated CD8 T cells.

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Article Synopsis
  • - Astrotactins (ASTNs) and Bone morphogenetic protein/retinoic acid inducible neural-specific proteins (BRINPs) are two protein groups within the MACPF superfamily that play important roles in the vertebrate nervous system, both during development and in maturity.
  • - These proteins are encoded by genes located at conserved regions in humans, which have been linked to neurodevelopmental disorders (NDDs), suggesting their significance in brain function and health.
  • - The review discusses the distribution, cellular localization, structural insights, genetic relationships, and overlapping functions of ASTNs and BRINPs, supported by findings from knock-out mouse studies.
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