Behavioral transition of a fish school in a crowded environment.

In open water, social fish gather to form schools, in which fish generally align with each other. In this work, we study how this social behavior evolves when perturbed by artificial obstacles. We measure the behavior of a group of zebrafish in the presence of a periodic array of pillars.

Fish evacuate smoothly respecting a social bubble.

Crowd movements are observed among different species and on different scales, from insects to mammals, as well as in non-cognitive systems, such as motile cells. When forced to escape through a narrow opening, most terrestrial animals behave like granular materials and clogging events decrease the efficiency of the evacuation. Here, we explore the evacuation behavior of macroscopic, aquatic agents, neon fish, and challenge their gregarious behavior by forcing the school through a constricted passage.

Collective orientation of an immobile fish school and effect on rheotaxis.

We study the orientational order of an immobile fish school. Starting from the second Newton law, we show that the inertial dynamics of orientations is ruled by an Ornstein-Uhlenbeck process. This process describes the dynamics of alignment between neighboring fish in a shoal-a dynamics already used in the literature for mobile fish schools.

Statistics of Colloidal Suspensions Stirred by Microswimmers.

We present a statistical analysis of the experimental trajectories of colloids in a dilute suspension of the green algae Chlamydomonas reinhardtii. The measured probability density function (pdf) of the displacements of colloids covers 7 orders of magnitude. The pdfs are characterized by non-Gaussian tails for intermediate time intervals, but nevertheless they collapse when scaled with their standard deviation.

Effective diffusivity of microswimmers in a crowded environment.

The microalga Chlamydomonas Reinhardtii is used here as a model system to study the effect of complex environments on the swimming of micro-organisms. Its motion can be modeled by a run and tumble mechanism so that it describes a persistent random walk from which we can extract an effective diffusion coefficient for the large-time dynamics. In our experiments, the complex medium consists of a series of pillars that are designed in a regular lattice using soft lithography microfabrication.

Effective viscosity of a suspension of flagellar-beating microswimmers: Three-dimensional modeling.

Micro-organisms usually can swim in their liquid environment by flagellar or ciliary beating. In this numerical work, we analyze the influence of flagellar beating on the orbits of a swimming cell in a shear flow. We also calculate the effect of the flagellar beating on the rheology of a dilute suspension of microswimmers.

Photofocusing: Light and flow of phototactic microswimmer suspension.

We explore in this paper the phenomenon of photofocusing: a coupling between flow vorticity and biased swimming of microalgae toward a light source that produces a focusing of the microswimmer suspension. We combine experiments that investigate the stationary state of this phenomenon as well as the transition regime with analytical and numerical modeling. We show that the experimentally observed scalings on the width of the focalized region and the establishment length as a function of the flow velocity are well described by a simple theoretical model.

Self-focusing and jet instability of a microswimmer suspension.

Three-dimensional (3D) numerical simulations are performed on suspensions composed of puller-like microswimmers that are sensitive to light (phototaxis) mimicking microalgae in a Poiseuille flow. Simulations are based on the numerical resolution of the flow equations at low Reynolds numbers discretized on a 3D grid (finite differences). The model reproduces the formation of a central jet of swimmers by self-focusing [Phys.

Amoeboid swimming: a generic self-propulsion of cells in fluids by means of membrane deformations.

Microorganisms, such as bacteria, algae, or spermatozoa, are able to propel themselves forward thanks to flagella or cilia activity. By contrast, other organisms employ pronounced changes of the membrane shape to achieve propulsion, a prototypical example being the Eutreptiella gymnastica. Cells of the immune system as well as dictyostelium amoebas, traditionally believed to crawl on a substratum, can also swim in a similar way.

Nonlinear elasticity of cross-linked networks.

Cross-linked semiflexible polymer networks are omnipresent in living cells. Typical examples are actin networks in the cytoplasm of eukaryotic cells, which play an essential role in cell motility, and the spectrin network, a key element in maintaining the integrity of erythrocytes in the blood circulatory system. We introduce a simple mechanical network model at the length scale of the typical mesh size and derive a continuous constitutive law relating the stress to deformation.

Light control of the flow of phototactic microswimmer suspensions.

Some microalgae are sensitive to light intensity gradients. This property is known as phototaxis: The algae swim toward a light source (positive phototaxis). We use this property to control the motion of microalgae within a Poiseuille flow using light.

Flow reduction in microchannels coated with a polymer brush.

We report on the design of microchannels made of glass capillary coated with polymer brushes elaborated by the so-called "grafting-from" technique. We present measurements of velocity profiles for pressure-driven flows of water in such "hairy" capillaries. We show that the flow reduction induced by the presence of the brush is unexpectedly greater than what could be anticipated from simple geometric arguments on the reduction of the effective capillary diameter or from predictions by models describing the brush layer as a poro-elastic boundary.

Random walk of a swimmer in a low-Reynolds-number medium.

Swimming at a micrometer scale demands particular strategies. When inertia is negligible compared to viscous forces, hydrodynamics equations are reversible in time. To achieve propulsion, microswimmers must therefore deform in a way that is not invariant under time reversal.

Effective viscosity of microswimmer suspensions.

The measurement of a quantitative and macroscopic parameter to estimate the global motility of a large population of swimming biological cells is a challenge. Experiments on the rheology of active suspensions have been performed. Effective viscosity of sheared suspensions of live unicellular motile microalgae (Chlamydomonas Reinhardtii) is far greater than for suspensions containing the same volume fraction of dead cells.

Nonlinear study of symmetry breaking in actin gels: implications for cellular motility.

Force generation by actin polymerization is an important step in cellular motility and can induce the motion of organelles or bacteria, which move inside their host cells by trailing an actin tail behind. Biomimetic experiments on beads and droplets have identified the biochemical ingredients to induce this motion, which requires a spontaneous symmetry breaking in the absence of external fields. We find that the symmetry breaking can be captured on the basis of elasticity theory and linear flux-force relationships.