Publications by authors named "Petr Bures"

Moreyra and co-authors, in their recent paper published in , presented a desperately needed Hyb-Seq phylogeny of the genus . Through their findings, they provided a critical assessment of an earlier proposal of ours to separate sect. and into the genera and , respectively.

View Article and Find Full Text PDF

Background: Genome size is influenced by natural selection and genetic drift acting on variations from polyploidy and repetitive DNA sequences. We hypothesized that centromere drive, where centromeres compete for inclusion in the functional gamete during meiosis, may also affect genome and chromosome size. This competition occurs in asymmetric meiosis, where only one of the four meiotic products becomes a gamete.

View Article and Find Full Text PDF

Angiosperms with large genomes experience nuclear-, cellular-, and organism-level constraints that may limit their phenotypic plasticity and ecological niche, which could increase their risk of extinction. Therefore, we test the hypotheses that large-genomed species are more likely to be threatened with extinction than those with small genomes, and that the effect of genome size varies across three selected covariates: life form, endemism, and climatic zone. We collated genome size and extinction risk information for a representative sample of angiosperms comprising 3250 species, which we analyzed alongside life form, endemism, and climatic zone variables using a phylogenetic framework.

View Article and Find Full Text PDF

Background: Species of the carnivorous family Lentibulariaceae exhibit the smallest genomes in flowering plants. We explored the hypothesis that their minute genomes result from the unique mitochondrial cytochrome c oxidase (COX) mutation. The mutation may boost mitochondrial efficiency, which is especially useful for suction-bladder traps of Utricularia, but also increase DNA-damaging reactive oxygen species, leading to genome shrinkage through deletion-biased DNA repair.

View Article and Find Full Text PDF
Article Synopsis
  • Increases in genome size in the plant genus Schoenus are linked to larger stomata and improved water-use efficiency (WUE), suggesting a relationship between genetic makeup and physiological traits.
  • Comparative analysis between Schoenus and Tetraria shows that genome size significantly influences stomatal parameters, with larger genomes leading to larger stomata and reduced conductance.
  • The study concludes that Schoenus exhibits more conservative physiological strategies compared to Tetraria, primarily due to differences in leaf size and reliance on culm photosynthesis, highlighting how genome size affects plant function.
View Article and Find Full Text PDF
Article Synopsis
  • The study investigates the effects of physical restraint in the prone position on lung function and breathing in violent patients.
  • The research involved ten university students undergoing two forms of restraint and monitored key respiratory parameters before and after five minutes of restraint.
  • Results indicated that both restraint methods led to reduced lung capacity (FVC) and peak expiratory flow (PEF), suggesting that prone restraint could pose serious risks and should be avoided in healthcare settings.
View Article and Find Full Text PDF
Article Synopsis
  • Angiosperms show diverse genome sizes and provide insights into global genome size distribution hypotheses, like large genome constraint and climate effects.
  • We compiled a dataset of over 16,000 angiosperm species to analyze how geography and climate influence genome size.
  • Our findings indicate that larger range sizes correlate with smaller genomes, and climate significantly affects genome size distribution, with various selective mechanisms involved.
View Article and Find Full Text PDF
Article Synopsis
  • Monogenea, specifically Eudiplozoon nipponicum, is a significant fish parasite whose nuclear and mitochondrial genomes were characterized to advance understanding of their interactions with host fish, particularly carp.
  • The research produced a draft genome consisting of 0.94 Gbp from over 50 Gbp of sequencing data, revealing 36,626 predicted genes and significant representation of protein functions involved in key physiological processes.
  • Findings show a diverse array of functional proteins, including peptidases and inhibitors, suggesting complex mechanisms like immunomodulation and feeding that facilitate the parasite's survival and interaction with fish hosts.
View Article and Find Full Text PDF

Polyploidy plays an important role in plant evolution, but knowledge of its eco-physiological consequences, such as of the putatively enlarged stomata of polyploid plants, remains limited. Enlarged stomata should disadvantage polyploids at low CO concentrations (namely during the Quaternary glacial periods) because larger stomata are viewed as less effective at CO uptake. We observed the growth, physiology, and epidermal cell features of 15 diploids and their polyploid relatives cultivated under glacial, present-day, and potential future atmospheric CO concentrations (200, 400, and 800 ppm respectively).

View Article and Find Full Text PDF

Background And Aims: While variation in genome size and chromosome numbers and their consequences are often investigated in plants, the biological relevance of variation in chromosome size remains poorly known. Here, we examine genome and mean chromosome size in the cyperid clade (families Cyperaceae, Juncaceae and Thurniaceae), which is the largest vascular plant lineage with predominantly holocentric chromosomes.

Methods: We measured genome size in 436 species of cyperids using flow cytometry, and augment these data with previously published datasets.

View Article and Find Full Text PDF
Article Synopsis
  • The study investigates how the number of genome copies (haploids vs. diploids) affects flavonoid production in Ginkgo biloba leaves.
  • Researchers found that haploids had smaller leaves and lower flavonoid contents compared to diploids, with significant differences observed in gene and protein expression.
  • The analysis revealed that haploids had 46.8% of differentially expressed genes upregulated and 42.1% of differentially expressed proteins downregulated, particularly affecting key genes involved in flavonoid biosynthesis.
View Article and Find Full Text PDF
Article Synopsis
  • The study examines the relationship between kinetochore size and chromosome size in eukaryotes, particularly in seven species of the Agavoideae plant subfamily.
  • The researchers used advanced microscopy techniques to measure and analyze the sizes of kinetochores and chromosomes, finding a strong positive correlation between them.
  • The results suggest that the scaling of kinetochore size with genome size may be influenced by the mechanics of cell division, potentially indicating evolutionary changes in kinetochore size alongside chromosome size.
View Article and Find Full Text PDF
Article Synopsis
  • The study investigates the prevalence of polyploidy within the Cyperaceae family, specifically focusing on the southern African clade of the genus Schoenus, amidst challenges distinguishing polyploids due to chromosomal alterations.
  • Using the ChromEvol program, researchers analyzed patterns of genome size evolution and inferred ploidy levels to explore the relationship between genome size, ploidy levels, and environmental factors in the Cape biodiversity hotspot.
  • Findings indicate that polyploidy is common in southern African Schoenus, with a positive correlation between chromosome number and genome size, and polyploids are often found in drier areas with variable precipitation.
View Article and Find Full Text PDF

Previous studies on grass species suggested that the total centromere size (sum of all centromere sizes in a cell) may be determined by the genome size, possibly because stable scaling is important for proper cell division. However, it is unclear whether this relationship is universal. Here we analyze the total centromere size using the CenH3-immunofluorescence area as a proxy in 130 taxa including plants, animals, fungi, and protists.

View Article and Find Full Text PDF
Article Synopsis
  • Flow cytometry (FCM) is the leading method for measuring nuclear DNA content in plants and has become more accessible with affordable, basic instruments.
  • The paper offers essential guidelines for best practices in FCM, covering topics like plant ploidy, genome size, and data interpretation for various plant science applications.
  • It includes troubleshooting tips and specific recommendations for ensuring accurate results and enhances the quality of FCM-related research publications.
View Article and Find Full Text PDF

Centromere drive model describes an evolutionary process initiated by centromeric repeats expansion, which leads to the recruitment of excess kinetochore proteins and consequent preferential segregation of an expanded centromere to the egg during female asymmetric meiosis. In response to these selfish centromeres, the histone protein CenH3, which recruits kinetochore components, adaptively evolves to restore chromosomal parity and counter the detrimental effects of centromere drive. Holocentric chromosomes, whose kinetochores are assembled along entire chromosomes, have been hypothesized to prevent expanded centromeres from acquiring a selective advantage and initiating centromere drive.

View Article and Find Full Text PDF

Premise: As repeatedly shown, the remarkable variation in the genome size of angiosperms can be shaped by extrinsic selective pressures, including nutrient availability. Carnivory has evolved independently in 10 angiosperm clades, but all carnivorous plants share a common affinity to nutrient-poor habitats. As such, carnivory and genome reduction could be responses to the same environmental pressure.

View Article and Find Full Text PDF
Article Synopsis
  • UV-B radiation damages plant DNA and triggers protective responses, such as synthesizing UV-B-protective compounds and endopolyploidy, particularly in monocentric plants.
  • Researchers studied 12 herbaceous species to assess the endopolyploidy index and UV-B protective compounds in relation to UV-B exposure in different habitats.
  • Results showed that monocentric species had a stronger increase in both UV-B protectives and endopolyploidy in response to UV-B stress, while holocentric species exhibited minimal response, indicating their potential adaptation to high UV environments.
View Article and Find Full Text PDF

Background And Aims: The idea that genome (size) evolution in eukaryotes could be driven by environmental factors is still vigorously debated. In extant plants, genome size correlates positively with stomatal size, leading to the idea that conditions enabling the existence of large stomata in fossil plants also supported growth of their genome size. We test this inductive assumption in drought-adapted, prostrate-leaved Cape (South Africa) geophytes where, compared with their upright-leaved geophytic ancestors, stomata develop in a favourably humid microclimate formed underneath their leaves.

View Article and Find Full Text PDF

The increasing number of patients with anaphylactic reactions is a modern challenge for healthcare professionals in clinical practice and public health professionals. It remains difficult to determine the prevalence or incidence of anaphylaxis in the population due to the long absence of a consensus definition, the fact that analyses are performed on various population groups and the use of different data collection methodologies. In the United States, anaphylaxis mortality ranges from 0.

View Article and Find Full Text PDF

Spiders are an ancient and extremely diverse animal order. They show a considerable diversity of genome sizes, karyotypes and sex chromosomes, which makes them promising models to analyse the evolution of these traits. Our study is focused on the evolution of the genome and chromosomes in haplogyne spiders with holokinetic chromosomes.

View Article and Find Full Text PDF

It has been hypothesized that species with holocentric chromosomes have a selective evolutionary advantage for developmental and reproductive success because holocentric chromosomes are less susceptible to chromosome breakage than monocentric chromosomes. We analyzed data on sterilizing doses of ionizing radiation for more than 250 species of arthropods to test whether the minimal dose for reproductive sterilization is higher for species with holocentric chromosomes than for species with monocentric chromosomes. Using linear mixed models that account for phylogeny, we show that holocentric arthropods are more tolerant of sterilizing radiation than monocentrics.

View Article and Find Full Text PDF
Article Synopsis
  • The study focuses on a rare Mesozoic gymnosperm lineage with a long evolutionary history lacking genome-wide duplications, highlighting the discovery of a viable spontaneous tetraploid sapling.
  • An extensive survey of over 2200 plants revealed significant ploidy variation, including 13 haploid, 3 triploid, and 10 tetraploid specimens, many of which had unique morphological traits.
  • The findings provide a valuable resource for future research and breeding efforts, which could help enhance the diversification of this endangered plant lineage.
View Article and Find Full Text PDF