Graph drawing using Jaya.

Graph drawing, involving the automatic layout of graphs, is vital for clear data visualization and interpretation but poses challenges due to the optimization of a multi-metric objective function, an area where current search-based methods seek improvement. In this paper, we investigate the performance of Jaya algorithm for automatic graph layout with straight lines. Jaya algorithm has not been previously used in the field of graph drawing.

What have we learned?

As the final outputs of the Reproducibility Project: Cancer Biology are published, it is clear that preclinical research in cancer biology is not as reproducible as it should be.

Euler diagrams drawn with ellipses area-proportionally (Edeap).

Background: Area-proportional Euler diagrams are frequently used to visualize data from Microarray experiments, but are also applied to a wide variety of other data from biosciences, social networks and other domains.

Results: This paper details Edeap, a new simple, scalable method for drawing area-proportional Euler diagrams with ellipses. We use a search-based technique optimizing a multi-criteria objective function that includes measures for both area accuracy and usability, and which can be extended to further user-defined criteria.

The efficacy of Euler diagrams and linear diagrams for visualizing set cardinality using proportions and numbers.

This paper presents the first empirical investigation that compares Euler and linear diagrams when they are used to represent set cardinality. A common approach is to use area-proportional Euler diagrams but linear diagrams can exploit length-proportional straight-lines for the same purpose. Another common approach is to use numerical annotations.

Publishing peer review materials.

Publishing peer review materials alongside research articles promises to make the peer review process more transparent as well as making it easier to recognise these contributions and give credit to peer reviewers. Traditionally, the peer review reports, editors letters and author responses are only shared between the small number of people in those roles prior to publication, but there is a growing interest in making some or all of these materials available. A small number of journals have been publishing peer review materials for some time, others have begun this practice more recently, and significantly more are now considering how they might begin.

Graph drawing using tabu search coupled with path relinking.

Graph drawing, or the automatic layout of graphs, is a challenging problem. There are several search based methods for graph drawing which are based on optimizing an objective function which is formed from a weighted sum of multiple criteria. In this paper, we propose a new neighbourhood search method which uses a tabu search coupled with path relinking to optimize such objective functions for general graph layouts with undirected straight lines.

A question of time.

How does a scientist balance establishing a career and starting a family?

Decisions, decisions.

Journals are exploring new approaches to peer review in order to reduce bias, increase transparency and respond to author preferences. Funders are also getting involved.

Writing for different readers.

More could be done to make research papers readily understandable by the public.

eulerAPE: drawing area-proportional 3-Venn diagrams using ellipses.

Venn diagrams with three curves are used extensively in various medical and scientific disciplines to visualize relationships between data sets and facilitate data analysis. The area of the regions formed by the overlapping curves is often directly proportional to the cardinality of the depicted set relation or any other related quantitative data. Drawing these diagrams manually is difficult and current automatic drawing methods do not always produce appropriate diagrams.

Prognostic value of baseline FDG uptake on PET-CT in esophageal carcinoma.

Aim: To evaluate the influence of baseline maximum standardized uptake value (SUVmax) on survival in a cohort of patients, undergoing positron emission tomography-computed tomography (PET-CT) scan for esophageal carcinoma.

Methods: The pre-treatment SUVmax numeric reading was determined in patients with confirmed esophageal or junctional cancer having PET-CT scan during the time period 1(st) January 2007 until 31(st) July 2012. A minimum follow up of 12 mo was required.

Drawing area-proportional Euler diagrams representing up to three sets.

Area-proportional Euler diagrams representing three sets are commonly used to visualize the results of medical experiments, business data, and information from other applications where statistical results are best shown using interlinking curves. Currently, there is no tool that will reliably visualize exact area-proportional diagrams for up to three sets. Limited success, in terms of diagram accuracy, has been achieved for a small number of cases, such as Venn-2 and Venn-3 where all intersections between the sets must be represented.

Transabdominal ultrasound for bowel evaluation.

This article considers the case for a strategic place for ultrasound (US) bowel evaluation focusing on three common clinical contexts. These include imaging for suspected acute appendicitis and acute diverticulitis, as well as the role of US in a multimodality approach for the diagnosis and management of inflammatory bowel disease and associated complications.

Wellformedness properties in Euler diagrams: which should be used?

Euler diagrams are often used to visualize intersecting data sets in applications such as criminology; genetics, medicine, and computer file systems. One interesting aspect of these diagrams is that some data sets cannot be drawn without breaking one or more "wellformedness properties," which are considered to reduce the user comprehension of the diagrams. However, it is possible to draw the same data with different diagrams, each of which breaks different wellformedness properties.

Automatic metro map layout using multicriteria optimization.

This paper describes an automatic mechanism for drawing metro maps. We apply multicriteria optimization to find effective placement of stations with a good line layout and to label the map unambiguously. A number of metrics are defined, which are used in a weighted sum to find a fitness value for a layout of the map.

Inductively generating Euler diagrams.

Euler diagrams have a wide variety of uses, from information visualization to logical reasoning. In all of their application areas, the ability to automatically layout Euler diagrams brings considerable benefits. In this paper, we present a novel approach to Euler diagram generation.

Drawing Euler Diagrams with Circles: The Theory of Piercings.

Euler diagrams are effective tools for visualizing set intersections. They have a large number of application areas ranging from statistical data analysis to software engineering. However, the automated generation of Euler diagrams has never been easy: given an abstract description of a required Euler diagram, it is computationally expensive to generate the diagram.

Multidetector computed tomography of the mesocolon: review of anatomy and pathology.

The anatomy of the mesocolon can be seen on multidetector computed tomography (MDCT) scans, and its most important anatomic landmarks are the mesocolic vessels. The high spatial resolution of the current generation scanner coupled with the ability to generate high quality multiplanar images is very helpful in the delineation of the mesocolon. These vessels include the ileocolic and right colic vessels for the ascending mesocolon, the middle colic vessels for the transverse mesocolon, and the inferior mesenteric vein for the sigmoid and descending mesocolon.