Publications by authors named "Peter Refki"

Genic copy number differences can have phenotypic consequences, but so far this has not been studied in detail in natural populations. Here, we analysed the natural variation of two families of tandemly repeated regulatory small nucleolar RNAs (SNORD115 and SNORD116) in the house mouse (Mus musculus). They are encoded within the Prader-Willi Syndrome gene region, known to be involved in behavioural, metabolic, and osteogenic functions in mammals.

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Article Synopsis
  • The study focuses on the genome sequencing of the milkweed bug Oncopeltus fasciatus, contributing to the understanding of the Hemiptera insect order.
  • The genome, which is 926 Mb in size, provides insights into protein-coding genes, molecular evolution, and the relationship between feeding ecology and gene structure.
  • This research enhances the molecular genetic toolkit for hemipteran species and emphasizes Oncopeltus as a valuable experimental model for future studies in insect genomics.
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Background: Having conquered water surfaces worldwide, the semi-aquatic bugs occupy ponds, streams, lakes, mangroves, and even open oceans. The diversity of this group has inspired a range of scientific studies from ecology and evolution to developmental genetics and hydrodynamics of fluid locomotion. However, the lack of a representative water strider genome hinders our ability to more thoroughly investigate the molecular mechanisms underlying the processes of adaptation and diversification within this group.

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  • The bed bug, Cimex lectularius, has become prevalent again globally over the last 20 years, likely due to increased travel, trade, and resistance to insecticides.
  • Recent genome analysis of the bed bug reveals 14,220 protein-coding genes associated with its reproductive behavior, feeding habits, and adaptations for surviving insecticide exposure.
  • This comprehensive genetic data serves as a crucial basis for future studies on how bed bugs resist treatments and interact with humans and other organisms.
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How novel genetic interactions evolve, under what selective pressures, and how they shape adaptive traits is often unknown. Here we uncover behavioural and developmental genetic mechanisms that enable water striders to survive attacks by bottom-striking predators. Long midlegs, critical for antipredator strategy, are shaped through a lineage-specific interaction between the Hox protein Ultrabithorax (Ubx) and a new target gene called gilt.

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Background: How adaptive phenotypes are shaped by the action of key developmental genes during ontogeny remains poorly understood. Water striders, a group of hemipteran insects, present a unique example of adaptation to life on the fluid water surface substrate. The group has undergone a set of leg modifications allowing them to efficiently move on the water surface and hence invade a variety of niches from ponds to open oceans.

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Evolutionary developmental biology (evo-devo) has provided invaluable contributions to our understanding of the mechanistic relationship between genotypic and phenotypic change. Similarly, evolutionary ecology has greatly advanced our understanding of the relationship between the phenotype and the environment. To fully understand the evolution of organismal diversity, a thorough integration of these two fields is required.

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Growth control scales morphological attributes and, therefore, provides a critical contribution to the evolution of adaptive traits. Yet, the genetic mechanisms underlying growth in the context of specific ecological adaptations are poorly understood. In water striders, adaptation to locomotion on the water surface is associated with allometric and functional changes in thoracic appendages, such that T2-legs, used as propelling oars, are longer than T3-legs, used as steering rudders.

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