Genetic evaluation of udder health traits in Spanish Holstein cows.

The aims of this study were to estimate the genetic parameters of clinical mastitis (CM) and SCS traits, and to compare the performance of genetic evaluations of CM traits using univariate and bivariate analyses (CM-SCS). Data were edited according to the Udder Health Golden Standard harmonization, and then 6 CM traits and 6 SCS traits were considered, as the result of combining 3 lactation classifications (1, 2, ≥3) and 2 milking periods (early, late). The linear mixed animal models included the ratio of period at risk as a covariate, herd-year of calving, month of calving, and lactation-age as fixed effects, and the permanent environmental effect for traits of ≥3 lactations.

Association between days open and milk spectral data in dairy cows.

Data on 19,489 Brown Swiss cows reared in northeastern Italy were used to associate absorbances of individual wavenumbers within the mid-infrared range with days open (DO). Different postcalving days in milk (DIM) intervals were studied to determine the most informative milk sampling periods for predicting DO. Milk samples were analyzed using a MilkoScan (Foss Electric, Hillerød, Denmark) Fourier-transform infrared (FTIR) spectrometer for 1,060 wavenumbers (wn) ranging from 5,011 to 925 cm.

Influence of age at first calving in a continuous calving season on productive, functional, and economic performance in a Blonde d'Aquitaine beef population.

The lifetime production of 7,655 cows with known age at first calving and a total of 27,118 parity records from 301 purebred Blonde d'Aquitaine herds were used to demonstrate the economic benefits of 2 yr of age at first calving. Ages at first calving ranged from 20 to 48 mo, and cows were divided into 5 calving groups, starting with early calving from age 20 to 27 mo up to late calving from age 40 to 48 mo. The information was gathered into 2 data sets, one for only primiparous cows and the second for all cows.

Effect of claw disorders on milk production, fertility, and longevity, and their economic impact in Spanish Holstein cows.

The aims of this study were (1) to estimate the phenotypic association between different degrees of severity of claw disorders and production, fertility performance, and longevity in Spanish dairy cattle, and (2) to quantify its economic impact at the animal and herd level. In this study, claw data comprised 108,468 trimmings collected between 2012 and 2014 by 25 trimmers from 804 Holstein dairy herds. The claw disorders considered were the 3 most frequent disorders in Spanish dairy herds: dermatitis (DE), sole ulcer (SU), and white line disease (WL).

Short communication: Association of foot and leg conformation and body weight with claw disorders in Spanish Holstein cows.

Data of first-lactation Holstein cows including claw disorders, foot and leg type traits, and structure and capacity type traits were used to study the phenotypic association of conformation and body weight with claw health status. The claw disorders studied were digital and interdigital dermatitis, sole ulcer, white line disease, and an overall claw disorder trait, indicating the presence of any of the 6 claw disorders recorded by the Spanish I-SAP program. Body weight was estimated indirectly with the Von Bertalanffy equation using live weight, which was also estimated from body depth, stature, and chest width.

Models for genetic evaluations of claw health traits in Spanish dairy cattle.

Genetic parameters of 7 claw health traits from Spanish dairy cattle were estimated and the predictive ability of linear and ordinal threshold models were compared and assessed. This study included data on interdigital and digital dermatitis (DE), sole ulcer (SU), white line disease (WL), interdigital hyperplasia (IH), interdigital phlegmon (IP), and chronic laminitis (CL) collected between July 2012 and June 2013 from 834 dairy herds visited by 21 trained trimmers. An overall claw disorder (OCD) was also considered an indicator the absence or the presence of at least 1 of the 6 disorders.

Weighting fibre and morphological traits in a genetic index for an alpaca breeding programme.

Nowadays, the fibre diameter (FD) is considered the main selection objective in alpaca populations all over the world. International Committee for Animal Recording recommendations define the FD and its CV as the first two traits to be considered in breeding programmes for this specie. In addition to these main criteria, other selection criteria of economic value used are comfort factor (CF) or standard deviation (s.

Genetic parameters for birthweight environmental variability in mice.

Data from a divergent experiment for birthweight (BrW) environmental variability were used to estimate genetic parameters for BrW trait and its environmental variability by fitting both homoscedastic (HO) and heteroscedastic (HE) models. A total of 5 475 records of BrW from animals born from inbred dams, and 7 140 pedigree records were used. The heritability of BrW using the model HO was 0.

Presence of Ostertagia ostertagi antibodies in bulk tank milk from cattle herds in northern Spain.

The objective of this survey was to investigate the Ostertagia ostertagi infection status of cattle dairy herds from northern Spain through measurement of antibody concentration in the bulk tank milk (BTM). In addition, management and performance data were collected to determine possible relationships with BTM O. ostertagi antibody levels.

Accuracy of Genome-Enabled Prediction in a Dairy Cattle Population using Different Cross-Validation Layouts.

The impact of extent of genetic relatedness on accuracy of genome-enabled predictions was assessed using a dairy cattle population and alternative cross-validation (CV) strategies were compared. The CV layouts consisted of training and testing sets obtained from either random allocation of individuals (RAN) or from a kernel-based clustering of individuals using the additive relationship matrix, to obtain two subsets that were as unrelated as possible (UNREL), as well as a layout based on stratification by generation (GEN). The UNREL layout decreased the average genetic relationships between training and testing animals but produced similar accuracies to the RAN design, which were about 15% higher than in the GEN setting.

Predictive ability of alternative models for genetic analysis of clinical mastitis.

Mastitis in cows can be defined as a binary trait, reflecting presence or absence of clinical mastitis (CM), or as a count variable, number of mastitis cases (NCM), within a defined time interval. Many different models have been proposed for genetic analyses of mastitis, and the objective of this study was to evaluate the predictive ability and sire predictions of a set of models for genetic evaluation of CM or NCM. Linear- and threshold liability models for CM, and linear, censored ordinal threshold, and zero-inflated Poisson (ZIP) models for NCM were compared in a cross-validation study.

Genetic parameters for growth of fiber diameter in alpacas.

The alpaca is the most important fiber producer of the South American camelid species, and is an important source of income for the Andean communities. Nowadays, fiber diameter is considered the main selection objective in alpaca populations throughout the world. However, fiber diameter increases with the age of the animals, and it would be preferable to select those animals that maintain a thin fiber throughout their life span.

Analysis of the existence of major genes affecting alpaca fiber traits.

The aim of this study was to determine the presence of major genes for fiber diameter (FD), SD of FD (SDFD), CV of FD, and comfort factor (CF) in Huacaya (HU) and Suri (SU) Peruvian alpaca breeds. Bayesian segregation analyses with relaxed transmission probabilities were performed using 1,906 and 6,592 available records for SU and HU breeds. Evidence for the presence of major genes was statistically supported when the 95% posterior density did not include zero.

Poisson versus threshold models for genetic analysis of clinical mastitis in US Holsteins.

Typically, clinical mastitis is coded as the presence or absence of disease in a given lactation, and records are analyzed with either linear models or binary threshold models. Because the presence of mastitis may include cows with multiple episodes, there is a loss of information when counts are treated as binary responses. Poisson models are appropriated for random variables measured as the number of events, and although these models are used extensively in studying the epidemiology of mastitis, they have rarely been used for studying the genetic aspects of mastitis.

Genetic evaluation of susceptibility to clinical mastitis in Spanish Holstein cows.

This study had 3 objectives: to estimate genetic parameters and predict sires' transmitting abilities for clinical mastitis in a Spanish Holstein population, to propose a methodology for comparing models with different response variables by using a cost-based loss function, and to evaluate alternative genetic evaluation models by using this methodology. On-farm records for clinical mastitis from herds in 3 Spanish regions were analyzed as a binary trait (CM) and as number of episodes (NCM) per lactation. Linear and probit models were fitted for CM, whereas linear and Poisson models were used for NCM.

Genetic and phenotypic relationships among locomotion type traits, profit, production, longevity, and fertility in Spanish dairy cows.

The phenotypic and genetic relationships of 3 locomotion traits with profit, production, longevity, and fertility traits were studied to determine the importance of locomotion traits for dairy producers. Two data sets including official milk records and type classification scores of 62,293 cows, and reproductive records of 24,561 cows from the Basque and Navarra Autonomous Regions were analyzed. Higher scores for feet and legs (FL), foot angle (FA), and rear legs set (RLS) were positively related to production and functional traits, whereas fertility was not significantly affected.

Economic value of female fertility and its relationship with profit in Spanish dairy cattle.

A data file of 225,085 inseminations and 120,713 lactations from 63,160 Holstein cows was analyzed to obtain female fertility economic value according to number of inseminations per service period (INS). Fertility cost (FCOST) was included in a bioeconomic model, taking into account number of doses of semen, hormonal treatments, fertility culling cost, and delayed milk and calf sales. A profit equation was elaborated to estimate fertility cost and profit according to INS.

Lifetime profit as an individual trait and prediction of its breeding values in Spanish Holstein cows.

Genetic parameters for lifetime profit and some productive traits were estimated from records of 42,401 Holstein cows with first calving before May 1996 from Navarra and Basque Autonomous Regions of Spain. Profit from the first, first two, and first three lactations were tested as early measures of profitability. Profit prediction was tested for another population of 2127 cows using selection indexes (Type-Production and economic indexes) and multitrait analysis for directly predicting profit from first-lactation records.

Genetic relationships between lifetime profit and type traits in Spanish Holstein cows.

Genetic parameters and relationships were estimated for profit and type traits for Spanish Holstein cows. In this study, 46,316 cows with official production and type data from Navarra and Basque autonomous regions of Spain were used to calculate profit per cow and year of productive life. Data from 239 Basque Autonomous Region herds in year 1995 were considered to obtain average prices system for yield, meat, feeding, and housing costs.