Simulated annealing and density functional theory calculations of structural and energetic properties of the ammonium chloride clusters (NH4Cl)n, (NH4+)(NH4Cl)n, and (Cl-)(NH4Cl)n, n = 1-13.

Simulated annealing Monte Carlo conformer searches using the "mag-walking" algorithm are employed to locate the global minima of molecular clusters of ammonium chloride of the types (NH(4)Cl)(n), (NH(4)(+))(NH(4)Cl)(n), and (Cl(-))(NH(4)Cl)(n) with n = 1-13. The M06-2X density functional theory method is used to refine and predict the structures, energies, and thermodynamic properties of the neutral, cation, and anion clusters. For selected small clusters, the resulting structures are compared to those obtained from a variety of models and basis sets, including RI-MP2 and B3LYP calculations.

The Arabidopsis ATRIP ortholog is required for a programmed response to replication inhibitors.

The programmed response to replication inhibitors in eukaryotic cells requires the protein kinase ATR (ataxia telangiectasia mutated and rad3-related), which is activated primarily through the persistence of replication protein A (RPA)-bound single-stranded DNA at stalled replication forks and sites of DNA damage undergoing excision repair. Once activated, ATR initiates a cascade of events, including cell-cycle arrest and induction of DNA repair, to mitigate the mutagenic effects of DNA replication in the presence of damage and/or blockage. While many of the molecular regulators of ATR have been determined in yeast and animal cells, little is known about ATR regulation in plants.