Publications by authors named "Patchareenart Saparpakorn"

Article Synopsis
  • The SARS-CoV-2 virus continues to mutate, resulting in many variants that are resistant to existing monoclonal antibody (mAb) therapies, though some mAbs still show effectiveness against variants like Omicron BA.1 and BA.2.
  • A new mAb, MW06, has been shown to neutralize most variants of concern and binds to a key conserved region.
  • The study investigates the binding affinity of MW06 and its combination with another mAb (MW05) using molecular dynamics simulations, revealing strong binding to the wildtype RBD but reduced effectiveness against mutated variants BA.1 and BA.2.
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A magnetic carbon nanofiber sorbent was facilely synthesized from bio-based bacterial cellulose and FeClvia impregnation, freeze-drying, followed by pyrolysis at 700 °C, without additional activation or nanofiber fabrication. The obtained material possessed intrinsic 3D naturally fibrous and porous structure with good magnetization. The adsorption results showed that the adsorption capacity of the prepared adsorbent towards bisphenol A (BPA) was as high as 618 mg/g, outperforming other adsorbents.

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A facile one-pot and green method was developed to prepare a nanocomposite of gold nanoparticle (AuNP), graphene (GP) and poly(3,4-ethylenedioxythiophene) polystyrene sulfonate (PEDOT:PSS). Graphene was first electro-exfoliated in a polystyrene sulfonate solution, followed by a one-step simultaneous formation of gold nanoparticle and PEDOT. The as-synthesized aqueous dispersion of AuNP-GP-PEDOT:PSS was thereafter used to modify the glassy carbon electrode (GCE).

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Diphenyl ether derivatives are good candidates for anti-tuberculosis agents that display a promising potency for inhibition of InhA, an essential enoyl-acyl carrier protein (ACP) reductase involved in fatty acid biosynthesis pathways in Mycobacterium tuberculosis. In this work, key structural features for the inhibition were identified by 3D-QSAR CoMSIA models, constructed based on available experimental binding properties of diphenyl ether inhibitors, and a set of four representative compounds was subjected to MD simulations of inhibitor-InhA complexes for the calculation of binding free energies. The results show that bulky groups are required for the R1 substituent on the phenyl A ring of the inhibitors to favor a hydrophobic pocket formed by residues Phe149, Met155, Pro156, Ala157, Tyr158, Pro193, Met199, Val203, Leu207, Ile215, and Leu218.

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Chaetoglobins A (1) and B (2), two azaphilone alkaloid dimers with an unprecedented skeleton, were characterized from an endophytic fungus Chaetomium globosum with the former ascertained to be a significant cytotoxin valuable for anti-tumor drug discovery.

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Phosphomevalonate kinase (PMK) catalyzes an essential step in the mevalonate pathway, which is the only pathway for synthesis of isoprenoids and steroids in humans. PMK catalyzes transfer of the gamma-phosphate of ATP to mevalonate 5-phosphate (M5P) to form mevalonate 5-diphosphate. Bringing these phosphate groups in proximity to react is especially challenging, given the high negative charge density on the four phosphate groups in the active site.

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Based on the molecular modeling analysis against Y181C HIV-1 RT, dipyridodiazepinone derivatives containing an unsubstituted lactam nitrogen and 2-chloro-8-arylthiomethyl were synthesized via an efficient route. Some of them were evaluated for their antiviral activity against HIV-1 RT subtype E and were found to exhibit virustatic activity comparable to some clinically used therapeutic agents.

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