A deep learning generative model approach for image synthesis of plant leaves.

Objectives: A well-known drawback to the implementation of Convolutional Neural Networks (CNNs) for image-recognition is the intensive annotation effort for large enough training dataset, that can become prohibitive in several applications. In this study we focus on applications in the agricultural domain and we implement Deep Learning (DL) techniques for the automatic generation of meaningful synthetic images of plant leaves, which can be used as a virtually unlimited dataset to train or validate specialized CNN models or other image-recognition algorithms.

Methods: Following an approach based on DL generative models, we introduce a Leaf-to-Leaf Translation (L2L) algorithm, able to produce collections of novel synthetic images in two steps: first, a residual variational autoencoder architecture is used to generate novel synthetic leaf skeletons geometry, starting from binarized skeletons obtained from real leaf images.

Mathematical and numerical challenges in optical screening of female breast.

Diffuse optical tomography (DOT) is an emerging imaging technique which uses light for diagnostic purposes in a non-invasive and non-ionizing way. In this paper, we focus on DOT application to female breast screening, where the surface of the breast is illuminated by light sources and the outgoing light is collected on the surface. The comparison of measured light data with the equivalent field obtained from a relevant mathematical model yields the DOT inverse problem whose solution provides an estimate of the optical coefficients of the tissue.

A poroelastic mixture model of mechanobiological processes in biomass growth: theory and application to tissue engineering.

In this article we propose a novel mathematical description of biomass growth that combines poroelastic theory of mixtures and cellular population models. The formulation, potentially applicable to general mechanobiological processes, is here used to study the engineered cultivation in bioreactors of articular chondrocytes, a process of Regenerative Medicine characterized by a complex interaction among spatial scales (from nanometers to centimeters), temporal scales (from seconds to weeks) and biophysical phenomena (fluid-controlled nutrient transport, delivery and consumption; mechanical deformation of a multiphase porous medium). The principal contribution of this research is the inclusion of the concept of cellular "force isotropy" as one of the main factors influencing cellular activity.

Blood flow mechanics and oxygen transport and delivery in the retinal microcirculation: multiscale mathematical modeling and numerical simulation.

The scientific community continues to accrue evidence that blood flow alterations and ischemic conditions in the retina play an important role in the pathogenesis of ocular diseases. Many factors influence retinal hemodynamics and tissue oxygenation, including blood pressure, blood rheology, oxygen arterial permeability and tissue metabolic demand. Since the influence of these factors on the retinal circulation is difficult to isolate in vivo, we propose here a novel mathematical and computational model describing the coupling between blood flow mechanics and oxygen ([Formula: see text]) transport in the retina.

A poroelastic model for the perfusion of the lamina cribrosa in the optic nerve head.

In this work we present a mathematical model for the coupling between biomechanics and hemodynamics in the lamina cribrosa, a thin porous tissue at the base of the optic nerve head which is thought to be the site of injury in ocular neurodegenerative diseases such as glaucoma. In this exploratory two-dimensional investigation, the lamina cribrosa is modeled as a poroelastic material where blood vessels are viewed as pores in a solid elastic matrix. The model is used to investigate the influence on the distributions of stress, blood volume fraction (or vascular porosity) and blood velocity within the lamina cribrosa due to the application of different levels of the intraocular pressure (IOP) and the enforcement of different mechanical constraints at the lamina's boundary.

A multiscale approach in the computational modeling of the biophysical environment in artificial cartilage tissue regeneration.

Tissue Engineering is a strongly interdisciplinary scientific area aimed at understanding the principles of tissue growth to produce biologically functional replacements for clinical use. To achieve such an ambitious goal, complex biophysical phenomena must be understood in order to provide the appropriate environment to cells (nutrient delivery, fluid-mechanical loading and structural support) in the bioengineered device. Such a problem has an inherent multiphysics/multiscale nature, as it is characterized by material heterogeneities and interplaying processes occurring within a wide range of temporal and spatial scales.

Breakthroughs in computational modeling of cartilage regeneration in perfused bioreactors.

We report about two specific breakthroughs, relevant to the mathematical modeling and numerical simulation of tissue growth in the context of cartilage tissue engineering in vitro. The proposed models are intended to form the building blocks of a bottom-up multiscale analysis of tissue growth, the idea being that a full microscale analysis of the construct, a 3-D partial differential equation (PDE) problem with internal moving boundaries, is computationally unaffordable. We propose to couple a PDE microscale model of a single functional tissue subunit with the information computed at the macroscale by 2-D-0-D models of reduced computational cost.

A multiphysics/multiscale 2D numerical simulation of scaffold-based cartilage regeneration under interstitial perfusion in a bioreactor.

In vitro tissue engineering is investigated as a potential source of functional tissue constructs for cartilage repair, as well as a model system for controlled studies of cartilage development and function. Among the different kinds of devices for the cultivation of 3D cartilage cell colonies, we consider here polymeric scaffold-based perfusion bioreactors, where an interstitial fluid supplies nutrients and oxygen to the growing biomass. At the same time, the fluid-induced shear acts as a physiologically relevant stimulus for the metabolic activity of cells, provided that the shear stress level is appropriately tuned.

Autocatalytic loop, amplification and diffusion: a mathematical and computational model of cell polarization in neural chemotaxis.

The chemotactic response of cells to graded fields of chemical cues is a complex process that requires the coordination of several intracellular activities. Fundamental steps to obtain a front vs. back differentiation in the cell are the localized distribution of internal molecules and the amplification of the external signal.