Time-dependent electron transfer and energy dissipation in condensed media.

We study a moving adsorbate interacting with a metal electrode immersed in a solvent using the time-dependent Newns-Anderson-Schmickler model Hamiltonian. We have adopted a semiclassical trajectory treatment of the adsorbate to discuss the electron and energy transfers that occur between the adsorbate and the electrode. Using Keldysh Green's function scheme, we found a non-adiabatically suppressed electron transfer caused by the motion of the adsorbate and coupling with bath phonons that model the solvent.

The influence of twist angle on the electronic and phononic band of 2D twisted bilayer SiC.

Silicon carbide has a planar two-dimensional structure; therefore it is a potential material for constructing twisted bilayer systems for applications. In this study, DFT calculations were performed on four models with different twist angles. We chose angles of 21.

Functional-renormalization-group approach to classical liquids with short-range repulsion: A scheme without repulsive reference system.

The renormalization-group approaches for classical liquids in previous works required a repulsive reference such as a hard-core one when applied to systems with short-range repulsion. The need for the reference is circumvented here by using a functional-renormalization-group approach for integrating the hierarchical flow of correlation functions along a path of variable interatomic coupling. We introduce the cavity distribution functions to avoid the appearance of divergent terms and choose a path to reduce the error caused by the decomposition of higher order correlation functions.

Quantum-mechanical hydration plays critical role in the stability of firefly oxyluciferin isomers: State-of-the-art calculations of the excited states.

Stabilizing mechanisms of three possible isomers (phenolate-keto, phenolate-enol, and phenol-enolate) of the oxyluciferin anion hydrated with quantum explicit water molecules in the first singlet excited state were investigated using first-principles Born-Oppenheimer molecular dynamics simulations for up to 1.8 ns (or 3.7 × 10 MD steps), revealing that the surrounding water molecules were distributed to form clear single-layered structures for phenolate-keto and multi-layered structures for phenolate-enol and phenol-enolate isomers.

Advances and challenges for experiment and theory for multi-electron multi-proton transfer at electrified solid-liquid interfaces.

Multi-electron, multi-proton transfer is important in a wide spectrum of processes spanning biological, chemical and physical systems. These reactions have attracted significant interest due to both fundamental curiosity and potential applications in energy technology. In this Perspective Review, we shed light on modern aspects of electrode processes in the 21st century, in particular on the recent advances and challenges in multistep electron/proton transfers at solid-liquid interfaces.

Photoabsorption Spectra of Aqueous Oxyluciferin Anions Elucidated by Explicit Quantum Solvent.

Experimental photoabsorption spectra of three possible isomers (phenolate-keto, phenolate-enol, and phenol-enolate) of oxyluciferin anions in aqueous solution were reproduced by first-principles time-dependent density functional theory simulations in which the entire system including the oxyluciferin anion and 64 water molecules were modeled by full quantum mechanics (full QM), unlike the conventional hybrid method, where the surrounding water molecules are modeled by molecular mechanics (MM) or a continuum solvent model. The full QM photoabsorption spectra were calculated from 1000 structures that had been obtained using the first-principles Born-Oppenheimer molecular dynamics simulations, which included the van der Waals correction, to take into account the effect of dynamical fluctuations of the hydration structure. The full QM calculation with CAM-B3LYP functional, which is the most elaborate one and is apparently the most consistent with experiment, is compared to others obtained with different levels of the functional and the solvent model.

Direct coupling of first-principles calculations with replica exchange Monte Carlo sampling of ion disorder in solids.

We demonstrate the feasibility of performing sufficient configurational sampling of disordered oxides directly from first-principles without resorting to the use of fitted models such as cluster expansion. This is achieved by harnessing the power of modern-day cluster supercomputers using the replica exchange Monte Carlo method coupled directly with structural relaxation and energy calculation performed by density functional codes. The idea is applied successfully to the calculation of the temperature-dependence of the degree of inversion in the cation sublattice of MgAlO spinel oxide.

Hydrogen adsorption on Pt(111) revisited from random phase approximation.

Hydrogen adsorption on Pt(111) has been actively studied using semilocal approximations within the density functional theory featuring simultaneous adsorption of hydrogen on multiple sites, i.e., fcc, atop, and hcp.

First-principles investigation of polarization and ion conduction mechanisms in hydroxyapatite.

We report first-principles simulation of polarization mechanisms in hydroxyapatite to explain the underlying mechanism behind the reported ion conductivities and polarization under electrical poling at elevated temperatures. It is found that ion conduction occurs mainly in the column of OH- ions along the c-axis through a combination of the flipping of OH- ions, exchange of proton vacancies between OH- ions, and the hopping of the OH- vacancy. The calculated activation energies are consistent with those found in conductivity measurements and thermally stimulated depolarization current measurements.

Experimental realization of two-dimensional Dirac nodal line fermions in monolayer CuSi.

Topological nodal line semimetals, a novel quantum state of materials, possess topologically nontrivial valence and conduction bands that touch at a line near the Fermi level. The exotic band structure can lead to various novel properties, such as long-range Coulomb interaction and flat Landau levels. Recently, topological nodal lines have been observed in several bulk materials, such as PtSn, ZrSiS, TlTaSe and PbTaSe.

Molecular size insensitivity of optical gap of [n]cycloparaphenylenes (n = 3-16).

The first-principles GW+Bethe-Salpeter method is applied to [n]cycloparaphenylenes ([n]CPPs, n = 3-16) to explain why the experimental UV-vis absorption spectra for n = 7-16 are roughly size-insensitive, unlike the fluorescence spectra. Having confirmed that the calculated absorption spectra consistently exhibit size-insensitivity, the exciton properties are investigated in detail using a novel analysis method based on the two-particle picture. The size-insensitivity of large-sized [n]CPPs (n≥9) is found due to a common spatial distribution of the wave functions involved with the first dark exciton and the first bright exciton, which are characterized primarily by a number of the wave function nodes.

The effect of dynamical fluctuations of hydration structures on the absorption spectra of oxyluciferin anions in an aqueous solution.

In this study, the effect of hydration on the absorption spectra of oxyluciferin anion isomers in an aqueous solution is investigated for elucidating the influence of characteristic hydration structures. Using a canonical ensemble of hydration structures obtained from first-principles molecular dynamics simulations, the instantaneous absorption spectra of keto-, enol-, and enolate-type aqueous oxyluciferin anions at room temperature are computed from a collection of QM/MM calculations using an explicit solvent. It is demonstrated that the calculations reproduce experimental results concerning spectral shifts and broadening, for which traditional methods based on quantum chemistry and the Franck-Condon approximation fail because of the molecular vibrations of oxyluciferin anions and dynamical fluctuations of their hydration structures.

Dirac Fermions in Borophene.

Honeycomb structures of group IV elements can host massless Dirac fermions with nontrivial Berry phases. Their potential for electronic applications has attracted great interest and spurred a broad search for new Dirac materials especially in monolayer structures. We present a detailed investigation of the β_{12} sheet, which is a borophene structure that can form spontaneously on a Ag(111) surface.

Quantitative characterization of exciton from GW+Bethe-Salpeter calculation.

We propose a method of classifying excitons into local-, Rydberg-, or charge transfer-type as a step toward enabling a data-driven material design of organic solar cells. The classification method is based on the first-principles many-body theory and improves over the conventional method based on state-by-state visualization of the one-electron wave functions. In our method, the exciton wave function is calculated within the level of the GW+Bethe-Salpeter equation, which is used to obtain two dimensionless parameters for the automatic classification.

Four-body correlation embedded in antisymmetrized geminal power wave function.

We extend the Coleman's antisymmetrized geminal power (AGP) to develop a wave function theory that can incorporate up to four-body correlation in a region of strong correlation. To facilitate the variational determination of the wave function, the total energy is rewritten in terms of the traces of geminals. This novel trace formula is applied to a simple model system consisting of one dimensional Hubbard ring with a site of strong correlation.

Reverse Stability of Oxyluciferin Isomers in Aqueous Solutions.

We investigated the stability of oxyluciferin anions (keto, enol, and enolate isomers) in aqueous solution at room temperature by performing a nanosecond time scale first-principles molecular dynamics simulation. In contrast to all previous quantum chemistry calculations, which suggested the keto-type to be the most stable, we show that the enol-type is slightly more stable than the keto-type, in agreement with some recent experimental studies. The simulation highlights the remarkable hydrophobicity of the keto-type by the cavity formed at the oxyluciferin-water interface as well as a reduction in hydrophobicity with the number of hydrating water molecules.

Symmetry breaking and excitonic effects on optical properties of defective nanographenes.

We investigate optical properties of the nanographene family and predict a defect induced effect by utilizing the all-electron first-principles GW+Bethe-Salpeter equation (BSE) method based on the many-body perturbation theory. As an accuracy check of the GW+BSE, photoabsorption spectra are calculated for a grossly warped nanographene (C80H30), which was very recently synthesized [Kawasumi et al., Nat.

Effect of thermal motion on catalytic activity of nanoparticles in polar solvent.

In this study, we propose that electrode potential fluctuations due to the thermal motion of the solvent may serve to enhance the catalytic activity of nanostructures. The proposed model uses a simple, Marcus-type treatment of the statistical behavior of the solvent and the Butler-Volmer law for the instantaneous catalytic rate as a function of the electrode potential. The rapid development of probing techniques with high spatial and temporal resolution will help to further confirm and characterize the dynamical properties of nanostructures.

Performance of Tamm-Dancoff approximation on nonadiabatic couplings by time-dependent density functional theory.

The Tamm-Dancoff approximation (TDA), widely used in physics to decouple excitations and de-excitations, is well known to be good for the calculation of excitation energies but not for oscillator strengths. In particular, the sum rule is violated in the latter case. The same concern arises within the TDA in the calculation of nonadiabatic couplings (NACs) by time-dependent density functional theory (TDDFT), due to the similarities in the TDDFT formulations of NACs and oscillator strengths [C.

First-principles molecular dynamics at a constant electrode potential.

A simulation scheme for performing first-principles molecular dynamics at a constant electrode potential is presented, opening the way for a more realistic modeling of voltage-driven devices. The system is allowed to exchange electrons with a reservoir at fixed potential, and dynamical equations for the total electronic charge are derived by using the potential energy of the extended system. In combination with a thermostat, this potentiostat scheme reproduces thermal fluctuations of the charge with the correct statistics, implying a realistic treatment of the potential as a control variable.

Symmetric tensor decomposition description of fermionic many-body wave functions.

The configuration interaction (CI) is a versatile wave function theory for interacting fermions, but it involves an extremely long CI series. Using a symmetric tensor decomposition method, we convert the CI series into a compact and numerically tractable form. The converted series encompasses the Hartree-Fock state in the first term and rapidly converges to the full-CI state, as numerically tested by using small molecules.

A GW+Bethe-Salpeter calculation on photoabsorption spectra of (CdSe)3 and (CdSe)6 clusters.

Photoabsorption spectra are calculated for the magic number clusters, (CdSe)(3) and (CdSe)(6), using an all-electron mixed basis GW scheme with the excitonic effect incorporated by solving the Bethe-Salpeter equation (BSE). The GW+BSE calculation provided clear size dependence of the optical gap as expected, while magnitude of the gap is overestimated compared to available experimental one. The gap is found very similarly overestimated when using the local density approximation (LDA) within the density functional theory because accidental error cancellation occurs between the significantly underestimated LDA gap and the excitonic effect neglected therein.

Second-order nonadiabatic couplings from time-dependent density functional theory: evaluation in the immediate vicinity of Jahn-Teller/Renner-Teller intersections.

For a rigorous quantum simulation of nonadiabatic dynamics of electrons and nuclei, knowledge of not only the first-order but also the second-order nonadiabatic couplings (NACs) is required. Here, we propose a method to efficiently calculate the second-order NAC from time-dependent density functional theory (TDDFT), on the basis of the Casida ansatz adapted for the computation of first-order NAC, which has been justified in our previous work and can be shown to be valid for calculating second-order NAC between ground state and singly excited states within the Tamm-Dancoff approximation. Test calculations of the second-order NAC in the immediate vicinity of Jahn-Teller and Renner-Teller intersections show that calculation results from TDDFT, combined with modified linear response theory, agree well with the prediction from the Jahn-Teller/Renner-Teller models.

All-electron calculation of nonadiabatic couplings from time-dependent density functional theory: Probing with the Hartree-Fock exact exchange.

We present the all-electron scheme of calculating nonadiabatic couplings (NACs) from time-dependent density functional theory (TDDFT) using atomic orbital basis. The formal expression for calculating NAC from linear response TDDFT [Hu et al., J.