Publications by authors named "Orthis Saha"

Article Synopsis
  • BIN1 is a crucial gene linked to Alzheimer's disease that regulates calcium balance, electrical activity, and gene expression in glutamatergic neurons, but its exact role has been unclear.
  • Research using single-cell RNA-sequencing on brain organoids revealed that BIN1 is primarily expressed in oligodendrocytes and glutamatergic neurons, with altered gene expressions observed in variants of BIN1 (heterozygous and knockout).
  • BIN1 influences calcium dynamics and neuron activity through its interaction with calcium channels, as seen in experiments that show potential treatment benefits using calcium channel blockers for BIN1 knockout neurons.
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Article Synopsis
  • Alzheimer's disease (AD) is a leading cause of dementia, marked by amyloid-beta (Aβ) plaques and other brain changes that lead to neuronal dysfunction.
  • This study explores how early accumulation of Aβ peptides affects human-induced neurons (hiNs), finding that low levels of these peptides increase neuronal excitability and alter calcium signaling.
  • The researchers also discovered that Aβ influences gene expression related to synapses and metabolic stress, activating specific signaling pathways that impact synaptic plasticity and early neural network function.
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The Bridging Integrator 1 (BIN1) gene is a major susceptibility gene for Alzheimer's disease (AD). Deciphering its pathophysiological role is challenging due to its numerous isoforms. Here we observed in Drosophila that human BIN1 isoform1 (BIN1iso1) overexpression, contrary to human BIN1 isoform8 (BIN1iso8) and human BIN1 isoform9 (BIN1iso9), induced an accumulation of endosomal vesicles and neurodegeneration.

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Ligand of Numb protein X1 (LNX1) is an E3 ubiquitin ligase that contains a catalytic RING (Really Interesting New Gene) domain and four PDZ (PSD-95, DlgA, ZO-1) domains. LNX1 can ubiquitinate Numb, as well as a number of other ligands. However, the physiological relevance of these interactions in vivo remain unclear.

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We recently defined genetic traits that distinguish sympathetic from parasympathetic neurons, both preganglionic and ganglionic (Espinosa-Medina et al., Science 354:893-897, 2016). By this set of criteria, we found that the sacral autonomic outflow is sympathetic, not parasympathetic as has been thought for more than a century.

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NUMB is a key regulator of neurogenesis and neuronal differentiation that can be ubiquitinated and targeted for proteasomal degradation by ligand of numb protein-X (LNX) family E3 ubiquitin ligases. However, our understanding of LNX protein function in vivo is very limited. To examine the role of LNX proteins in regulating NUMB function in vivo, we generated mice lacking both LNX1 and LNX2 expression in the brain.

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LNX1 and LNX2 are E3 ubiquitin ligases that can interact with Numb - a key regulator of neurogenesis and neuronal differentiation. LNX1 can target Numb for proteasomal degradation, and Lnx mRNAs are prominently expressed in the nervous system, suggesting that LNX proteins play a role in neural development. This hypothesis remains unproven, however, largely because LNX proteins are present at very low levels in vivo.

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Background: LNX (Ligand of Numb Protein-X) proteins typically contain an amino-terminal RING domain adjacent to either two or four PDZ domains - a domain architecture that is unique to the LNX family. LNX proteins function as E3 ubiquitin ligases and their domain organisation suggests that their ubiquitin ligase activity may be targeted to specific substrates or subcellular locations by PDZ domain-mediated interactions. Indeed, numerous interaction partners for LNX proteins have been identified, but the in vivo functions of most family members remain largely unclear.

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