Publications by authors named "Omae Y"

Background: Thermal damage may lead to inflammation of the peeled mucosal surface during endoscopic submucosal dissection (ESD).

Aim: To determine the effect of Joule heat on the onset of post-ESD electrocoagulation syndrome (PECS).

Methods: In this prospective study, PECS was characterized by in-hospital fever (white blood cell count: ≥ 10000 μ/L or body temperature ≥ 37.

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Purpose: Achromatopsia (ACHM) is an early-onset cone dysfunction caused by 5 genes with cone-specific functions (, , , and ) and by , a transcription factor with ubiquitous expression. To improve the relatively low variant detection ratio in these genes in a cohort of exome-sequenced Japanese patients with inherited retinal diseases (IRD), we performed genome sequencing to detect structural variants and intronic variants in patients with ACHM.

Methods: Genome sequencing of 10 ACHM pedigrees was performed after exome sequencing.

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  • The COVID-19 pandemic's spread is closely linked to human movement, leading researchers to explore factors influencing this flow, particularly in relation to vaccinations and regional characteristics.
  • A study in Narashino City, Japan, utilized machine learning models, specifically LightGBM, to analyze how vaccination rates and infection numbers impact human flow patterns.
  • The results suggest that before vaccinations, people's mobility was more influenced by infection rates in larger areas, while post-vaccination, local infection numbers may gain more focus, indicating a potential shift in public perception of risk.
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  • Tuberculosis caused by Mycobacterium tuberculosis (Mtb) remains a major global health concern, and this study introduces a new method to identify large genetic insertions and deletions (indels) that have been overlooked.
  • The analysis of 1,960 Mtb clinical isolates shows that harmful genetic variants are rarely found in essential survival genes, while Mtb genomes contain many partially harmful mutations.
  • The research also links specific genetic variations, including indels in various genes, to patient outcomes and antibiotic resistance, offering insights that could improve tuberculosis treatment and prediction of risks.
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We report a case of Wilson disease (WD) with dilated cardiomyopathy in which whole-genome sequencing (WGS) revealed the rare co-occurrence of two novel compound heterozygous ATP7B pathogenic variants (NM_001005918.3:c.2250del/p.

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  • Multiple system atrophy (MSA) is a neurodegenerative disease that displays symptoms like autonomic failure, parkinsonism, and cerebellar ataxia.
  • Researchers used whole-genome sequencing to study the role of the GBA1 gene in MSA and dealt with challenges due to its similarity to a pseudogene, GBA1LP.
  • They found five variants with discrepancies in genetic analyses and confirmed that the variant p.L483P is associated with MSA at a significant level, suggesting it could be a risk factor for the disease.
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Peroxisome proliferator-activated receptor γ (PPARγ) belongs to the nuclear receptor superfamily and is involved in the inflammatory process. Previously, we synthesized the ligands of PPARγ that possess the hybrid structure of a food-derived cinnamic acid derivative (CA) and GW9662, an irreversible PPARγ antagonist. These ligands activate the transcription of PPARγ through the covalent bond formation with the Cys285 residue of PPARγ, whereas their anti-inflammatory effect has not been examined yet.

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  • Researchers studied leukocyte immunoglobulin-like receptors (LILRs) on chromosome 19, which show genetic variations across human populations and have complex genomic regions that are hard to characterize.
  • They used a tool called JoGo-LILR CN Caller to analyze data from over 2,500 whole genome sequencing samples, discovering a novel large deletion in the Japanese population that affects three genes.
  • This deletion creates a hybrid gene combining parts of two LILR genes, leading to potentially new signaling functions, with similar hybrid genes also identified in another population sample.
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  • The study focuses on heart failure with preserved ejection fraction (HFpEF), aiming to improve classification by incorporating exercise assessments alongside clinical characteristics.
  • A total of 265 HFpEF patients were tested through exercise stress echocardiography, leading to the identification of three distinct phenogroups based on various clinical and exercise-related parameters.
  • The phenogroups revealed differences in cardiac function, exercise capacity, and prognosis, with two groups showing higher rates of mortality and heart failure events compared to the third group.
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Objectives: Distinguishing human T-cell lymphotropic virus type 1 (HTLV-1)-associated myelopathy from hereditary spastic paraplegia in patients infected with HTLV-1 is challenging due to overlapping clinical symptoms. The aim of this study was to explore the possibility that hereditary spastic paraplegia is inherently present in patients diagnosed with HTLV-1-associated myelopathy.

Methods: We performed whole-genome sequencing on 315 unrelated patients registered in the HTLV-1-Associated Myelopathy patient registry "HAM-net," from 2013 to 2022 in Japan.

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  • Ischemic stroke in young adults can result from various causes, including genetic disorders, and this study investigates a case involving a 17-year-old male with ischemic stroke and visceral heterotaxy.
  • Neurological, radiological, and genetic evaluations were performed, revealing embolic stroke through MRI, visceral heterotaxy via CT, and a cardiac anomaly with right-to-left shunt (RLS) through echocardiogram.
  • Whole genome sequencing identified a mutation in the NODAL gene, essential for left-right body axis determination, marking the first genetically-confirmed case of this condition linked to young embolic stroke.
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In neurological and neuropsychiatric diseases, different brain regions are affected, and differences in gene expression patterns could potentially explain this mechanism. However, limited studies have precisely explored gene expression in different regions of the human brain. In this study, we performed long-read RNA sequencing on three different brain regions of the same individuals: the cerebellum, hypothalamus, and temporal cortex.

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The Japanese archipelago is a terminal location for human migration, and the contemporary Japanese people represent a unique population whose genomic diversity has been shaped by multiple migrations from Eurasia. We analyzed the genomic characteristics that define the genetic makeup of the modern Japanese population from a population genetics perspective from the genomic data of 9,287 samples obtained by high-coverage whole-genome sequencing (WGS) by the National Center Biobank Network. The dataset comprised populations from the Ryukyu Islands and other parts of the Japanese archipelago (Hondo).

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  • This study introduces a new cost-effective method called the Flongle SCA repeat panel sequencing (FLO-SCAp) that uses a smaller long-read sequencing device to analyze these repeat expansions efficiently.
  • FLO-SCAp successfully detected various genetic features in SCA patients, showing a high correlation with more expensive whole-genome sequencing methods, making it a promising first-line diagnostic tool for SCA.
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The efficacy of low-carbohydrate, high-fat diets, such as ketogenic diets, for cancer patients is of research interest. We previously demonstrated the efficacy of the ketogenic diet in a case study in which medium-chain triglycerides (MCTs) or MCT-containing formula (ketogenic formula) was used as a supplement to increase blood ketone bodies. However, little is known about the amounts needed to induce ketogenic effects and about the usefulness of monitoring of breath acetone.

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Hyperphosphatemic familial tumoral calcinosis (HFTC) is a rare, inherited autosomal recessive disorder caused by fibroblast growth factor-23 (), N-acetylgalactosaminyltransferase 3 (), or Klotho () gene variants. Here, we report the case of a Japanese boy who presented with a mass in his left elbow at the age of three. Laboratory test results of the patient revealed normocalcemia (10.

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  • Atrial fibrillation (AF) is a complex condition, and a study analyzed patient data to identify distinct clusters of AF, assessing their prognostic implications for mortality and cardiovascular events.
  • The researchers used two large registries with over 6,900 patients combined, applying cluster analysis on 14 clinical variables, which led to the identification of five patient clusters based on age, gender, comorbidities, and health risks.
  • The study found that risk of mortality and cardiovascular events varied significantly among these clusters, suggesting that recognizing these phenotypes may aid in pinpointing high-risk AF patients for better management.
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The KANNO blood group system (International Society of Blood Transfusion [ISBT] 037) includes one high-prevalence antigen, KANNO1, across ethnic groups. Sporadic KANNO1- cases among East and South Asians are theoretically estimated by the DNA database library. Anti-KANNO1 has been found most often among Japanese women with current or prior pregnancy.

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The genetics underlying tuberculosis (TB) pathophysiology are poorly understood. Human genome-wide association studies have failed so far to reveal reproducible susceptibility loci, attributed in part to the influence of the underlying Mycobacterium tuberculosis (Mtb) bacterial genotype on the outcome of the infection. Several studies have found associations of human genetic polymorphisms with Mtb phylo-lineages, but studies analysing genome-genome interactions are needed.

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Due to the emergence of the novel coronavirus disease, many recent studies have investigated prediction methods for infectious disease transmission. This paper proposes a framework to quickly screen infection control scenarios and identify the most effective scheme for reducing the number of infected individuals. Analytical methods, as typified by the SIR model, can conduct trial-and-error verification with low computational costs; however, they must be reformulated to introduce additional constraints, and thus are inappropriate for case studies considering detailed constraint parameters.

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Aims: Acute decompensated heart failure (ADHF) presents with pulmonary congestion, which is caused by an increased pulmonary arterial wedge pressure (PAWP). PAWP is strongly associated with prognosis, but its quantitative evaluation is often difficult. Our prior work demonstrated that a deep learning approach based on chest radiographs can calculate estimated PAWP (ePAWP) in patients with cardiovascular disease.

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Human cytomegalovirus (HCMV) infections develop into CMV diseases that result in various forms of manifestations in local organs. CMV-retinitis is a form of CMV disease that develops in immunocompromised hosts with CMV-viremia after viruses in the peripheral circulation have entered the eye. In the HCMV genome, extensive diversification of the UL40 gene has produced peptide sequences that modulate NK cell effector functions when loaded onto HLA-E and are subsequently recognized by the NKG2A and NKG2C receptors.

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There are six national centers (6NCs) for advanced and specialized medicine in Japan that conduct basic and clinical research on major diseases that have a substantial impact on national health. Disease-specific bioresources and information collected by each NC are stored in a separate biobank. The National Center Biobank Network (NCBN) was established in 2011 and coordinates the biobanks and researchers of the 6NCs via an open-access database (Catalogue Database: http://www2.

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