The fixation index, , has been a staple measure to detect selection, or departures from random mating in populations. However, current Next Generation Sequencing (NGS) cannot easily estimate , in multi-locus gene families that contain multiple loci having similar or identical arrays of variant sequences of ≥1 kilobase (kb), which differ at multiple positions. In these families, high-quality short-read NGS data typically identify variants, but not the genomic location, which is required to calculate (based on locus-specific observed and expected heterozygosity).
View Article and Find Full Text PDFClimate change is predicted to affect host-parasite interactions, and for some hosts, parasite infection is expected to increase with rising temperatures. Global population declines of important pollinators already have been attributed to climate change and parasitism. However, the role of climate in driving parasite infection and the genetic basis for pollinator hosts to respond often remain obscure.
View Article and Find Full Text PDFHuman-caused mortality of wildlife is a pervasive threat to biodiversity. Assessing the population-level impact of fisheries bycatch and other human-caused mortality of wildlife has typically relied upon deterministic methods. However, population declines are often accelerated by stochastic factors that are not accounted for in such conventional methods.
View Article and Find Full Text PDFAdv Exp Med Biol
September 2019
Both survival and reproduction are important fitness components, and thus critical to the viability of wildlife populations. Preventing one death (survival) or contributing one newborn (reproduction), has arguably the same effect on population dynamics-in each instance the population grows or is maintained by one additional member. However, for the conservation of slow-growing animal populations, the importance of reproduction is sometimes overlooked when evaluating wildlife management options.
View Article and Find Full Text PDFThe antagonistic relationship between parasites and their hosts is strongly influenced by genotype-by-genotype interactions. Defense against parasitism is commonly studied in the context of immune system-based mechanisms and, thus, the focus in the search for candidate genes in host-parasite interactions is often on immune genes. In this study, we investigated the association between prevalence of parasite infection and host mitochondrial DNA (mtDNA) haplotypes in two natural populations of bumblebees (Bombus terrestris).
View Article and Find Full Text PDFIt has been proposed that in slow-growing vertebrate populations survival generally has a greater influence on population growth than reproduction. Despite many studies cautioning against such generalizations for conservation, wildlife management for slow-growing populations still often focuses on perturbing survival without careful evaluation as to whether those changes are likely or feasible. Here, we evaluate the relative importance of reproduction and survival for the conservation of two bottlenose dolphin ( cf ) populations: a large, apparently stable population and a smaller one that is forecast to decline.
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