Publications by authors named "Olga Efimova"

In the present study, we aimed to investigate intratumoral karyotype diversity as well as the estrogen/progesterone effect on the cytogenetic profile of uterine leiomyomas (ULs). A total of 15 UL samples obtained from 15 patients were cultured in the media supplemented with estrogen and/or progesterone and without adding hormones. Conventional cytogenetic analysis of culture samples revealed clonal chromosomal abnormalities in 11 out of 15 ULs.

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Chromosomal abnormalities of the embryo are the most common cause of first-trimester pregnancy loss. In this single-center study, we assessed the frequency and the spectrum of chromosomal abnormalities in miscarriages for each year of maternal age from 23 to 44. Cytogenetic data were obtained by conventional karyotyping of 7118 miscarriages in women with naturally conceived pregnancies.

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Numerous brain imaging studies have reported white matter alterations in schizophrenia, but the lipidome analysis of the corresponding tissue remains incomplete. In this study, we investigated the lipidome composition of six subcortical white matter regions corresponding to major axonal tracks in both control subjects and schizophrenia patients. All six regions exhibited a consistent pattern of quantitative lipidome alterations in schizophrenia, involving myelin-forming and mitochondria associated lipid classes.

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  • Schizophrenia affects brain structure and function, with research focusing on both anatomical and molecular changes, particularly in lipids and metabolites.
  • A spatial analysis of lipid composition in specific neocortical regions (BA9 and BA22p) aims to understand how schizophrenia alters lipid profiles in gray and white matter.
  • Findings indicate that lipid changes are distributed unevenly, with more pronounced differences in the subcortical white matter of BA22p compared to BA9, revealing varying impacts on lipid classes between regions and tissue types.
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  • Preimplantation genetic testing for aneuploidies (PGT-A) is commonly used in assisted reproduction, but surprisingly, it doesn't significantly enhance clinical outcomes due to discrepancies between PGT-A results and the actual chromosomal makeup of blastocysts.
  • A study analyzed 23 blastocysts from 17 couples, where PGT-A revealed chromosomal imbalances, by re-biopsying the trophectoderm (TE) and separately examining the inner cell mass (ICM).
  • Out of the 23 cases, only 8 had consistent PGT-A results with re-biopsy findings, while 4 showed partial discordance, indicating the complexity of accurately assessing chromosomal status in embryos.
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Lipids are the most abundant but poorly explored components of the human brain. Here, we present a lipidome map of the human brain comprising 75 regions, including 52 neocortical ones. The lipidome composition varies greatly among the brain regions, affecting 93% of the 419 analyzed lipids.

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  • Chromatin structure plays a crucial role in determining gene expression and cell identity, especially in neurons, through the action of polycomb group (PcG) proteins.
  • A study mapping the 3D genome in neuronal and non-neuronal cells from the Wernicke's area shows that neurons have less separation between active and inactive gene regions compared to other brain cells.
  • Neuronal cells display unique chromatin interactions, including a specific network of PcG contacts linked to genes that control development, with a distinct pattern of histone modifications that suggest a functional significance of these interactions for neuron identity.
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Background: Transcriptomic studies of the brains of schizophrenia (SZ) patients have produced abundant but largely inconsistent findings about the disorders pathophysiology. These inconsistencies might stem not only from the heterogeneous nature of the disorder, but also from the unbalanced focus on particular cortical regions and protein-coding genes. Compared to protein-coding transcripts, long intergenic non-coding RNA (lincRNA) display substantially greater brain region and disease response specificity, positioning them as prospective indicators of SZ-associated alterations.

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Predicting the clinical outcomes of intracytoplasmic sperm injection (ICSI) cycles that use the testicular spermatozoa of azoospermic patients presents a challenge. Thus, the development of additional approaches to assessing the competence of a testicular-sperm-derived embryo without causing damage to gametes or the embryo is necessary. One of the key parameters in determining such developmental competence is telomere length (TL).

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We report on the case of prenatal detection of trisomy 2 in placental biopsy and further algorithm of genetic counseling and testing. A 29-year-old woman with first-trimester biochemical markers refused chorionic villus sampling and preferred targeted non-invasive prenatal testing (NIPT), which showed low risk for aneuploidies 13, 18, 21, and X. A series of ultrasound examinations revealed increased chorion thickness at 13/14 weeks of gestation and fetal growth retardation, a hyperechoic bowel, challenging visualization of the kidneys, dolichocephaly, ventriculomegaly, increase in placental thickness, and pronounced oligohydramnios at 16/17 weeks of gestation.

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Uterine leiomyomas (ULs), frequent benign tumours of the female reproductive tract, are associated with a range of symptoms and significant morbidity. Despite extensive research, there is no consensus on essential points of UL initiation and development. The main reason for this is a pronounced inter- and intratumoral heterogeneity resulting from diverse and complicated mechanisms underlying UL pathobiology.

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Neuropathic pain is a condition affecting the quality of life of a substantial part of the population, but biomarkers and treatment options are still limited. While this type of pain is caused by nerve damage, in which lipids play key roles, lipidome alterations related to nerve injury remain poorly studied. Here, we assessed blood lipidome alterations in a common animal model, the rat sciatic nerve crush injury.

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Response to analgesic therapy is influenced by several factors including genetics and drug-drug interactions. Pharmacogenetic (PGx) variants in the CYP2D6 gene modify response to opioids by altering drug metabolism. We sought to determine the potential impact of PGx testing on the care of Veterans with noncancer pain prescribed opioids metabolized by CYP2D6 (codeine, hydrocodone, or tramadol).

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Nanocomposites based on poly(styrene--isobutylene--styrene) (SIBS) and single-walled carbon nanotubes (CNTs) were prepared and characterized in terms of tensile strength as well as bio- and hemocompatibility. It was shown that modification of CNTs using dodecylamine (DDA), featured by a long non-polar alkane chain, provided much better dispersion of nanotubes in SIBS as compared to unmodified CNTs. As a result of such modification, the tensile strength of the nanocomposite based on SIBS with low molecular weight (M = 40,000 g mol) containing 4% of functionalized CNTs was increased up to 5.

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  • A comparative cytogenomic analysis of cultured and uncultured uterine leiomyoma (UL) samples revealed significant chromosomal abnormalities, including complex rearrangements and mutations in some cases.
  • The study found that both cultured and uncultured UL samples exhibited shorter telomeres compared to normal myometrium, which may be linked to the observed chromosomal rearrangements.
  • The results highlighted that ULs present both inter- and intratumor genetic heterogeneity, with unique clonal spectra for each tumor, while the frequencies of abnormal cells can vary between cultured and uncultured samples.
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An association between high serum calcium/phosphate and cardiovascular events or death is well-established. However, a mechanistic explanation of this correlation is lacking. Here, we examined the role of calciprotein particles (CPPs), nanoscale bodies forming in the human blood upon its supersaturation with calcium and phosphate, in cardiovascular disease.

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The present study focuses on the immobilization of the bacterial ribonuclease barnase (Bn) into submicron porous calcium carbonate (CaCO) particles. For encapsulation, we apply adsorption, freezing-induced loading and co-precipitation methods and study the effects of adsorption time, enzyme concentration and anionic polyelectrolytes on the encapsulation efficiency of Bn. We show that the use of negatively charged dextran sulfate (DS) and ribonucleic acid from yeast (RNA) increases the loading capacity (LC) of the enzyme on CaCO particles by about 3-fold as compared to the particles with Bn itself.

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  • * Researchers developed a natural language processing (NLP) algorithm to analyze clinical notes for identifying veterans with metastatic prostate cancer, using a comprehensive dataset from the Veterans Affairs.
  • * The NLP algorithm successfully identified 76,082 veterans with metastatic prostate cancer, demonstrating high reliability and accuracy, and has the potential to enhance cancer registry data and support treatment innovations.
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Background: The Veterans Health Administration (VHA) is the largest integrated health care system in the United States (US). Among VHA patients, the rate of use of concurrent chemoradiation therapy (CCRT) among those with unresectable, stage III non-small cell lung cancer (NSCLC) is unknown. The objective was to report recent CCRT treatment patterns in VHA patients and identify characteristics associated with receipt of CCRT.

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Most healthcare-associated infections (HCAIs) develop due to the colonisation of patients and healthcare workers by multidrug-resistant organisms (MDRO). Here, we investigated whether the particulate matter from the ventilation systems (Vent-PM) of health facilities can harbour MDRO and other microbes, thereby acting as a potential reservoir of HCAIs. Dust samples collected in the ventilation grilles and adjacent air ducts underwent a detailed analysis of physicochemical properties and biodiversity.

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  • The study explores telomere length (TL) in chorionic cytotrophoblast cells from both normal and abnormal first trimester pregnancies, finding no significant differences in TL for karyotypically normal samples between miscarriages and ongoing pregnancies.
  • Notably, karyotypically abnormal samples showed significantly higher TLs in ongoing pregnancies compared to miscarriages, and also had higher TLs compared to karyotypically normal samples in ongoing pregnancies.
  • The research suggests that interchromatid TL asymmetry and its association with certain methylation patterns are related to the developmental processes of chorionic cytotrophoblast, indicating that TL variations are inherited rather than influenced by telomere elongation mechanisms.
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  • The study investigates how telomere length (TL) affects human lifespan, focusing on its determination in triploid zygotes from both maternal and paternal chromosomes.
  • Using Q-FISH, researchers analyzed TL in 28 human triploid zygotes, finding that paternal chromosomes exhibited longer mean relative TLs compared to maternal ones, indicating a possible "imprinting" effect.
  • Despite the differences in TL based on parental origin, age or quality of sperm did not influence TL, highlighting the importance of heredity over environmental factors in determining TL in zygotes.
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In the present study, we aimed to check whether uterine leiomyomas (ULs) with an apparently normal karyotype in vitro comprise "hidden" cell subpopulations with numerical chromosome abnormalities (heteroploid cells). A total of 32 ULs obtained from 32 patients were analyzed in the study. Each UL was sampled for in vivo and in vitro cytogenetic studies.

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Background: Epidermal growth factor receptor (EGFR) mutation testing is recommended in metastatic non-small cell lung cancer (NSCLC). The objective of this study was to assess changes in EGFR mutation testing patterns and tyrosine kinase inhibitor (TKI) use in US veterans with stage III-IV NSCLC between 2013 and 2017.

Patients And Methods: Retrospective study using linked data from Department of Veterans Affairs (VA) Cancer Registry System, Corporate Data Warehouse, commercial laboratories, and clinical notes.

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There has been growing interest in recent years in developing multifunctional materials for studying the structure interface in biological systems. In this regard, the multimodal systems, which possess activity in the near-infrared (NIR) region, become even more critical for the possibility of improving examined biotissue depth and, eventually, data analysis. Herein, we engineered bi-modal contrast agents by integrating carbon nanotubes (CNT) and gold nanoparticles (AuNP) around silica microspheres using the Layer-by-Layer self-assembly method.

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