Data on the polymorphic sites in the chloroplast genomes of seven perennial species.

Data present the chloroplast genome sequences of seven wild perennial species obtained by using the Illumina HiSeq and NextSeq platforms. Datasets not included in the primary publication [1] are a source for further evolutionary studies. In particular, the annotated chloroplast genomes and datasets of single nucleotide polymorphisms (SNP), simple sequence repeats (SSR), insertion and deletion polymorphisms (INDEL) for , and are presented.

Data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic CMS lines.

Data presents the chloroplast genome sequences of the five sunflower alloplasmic cytoplasmic male sterility (CMS) lines obtained with using the Illumina MiSeq, HiSeq and NextSeq platforms. The sunflower alloplasmic CMS lines has the same nuclear genome from line HA89, but they differ in cytoplasmic genomes, inherited from annual (PET1, PET2 - , ANN2 - ) and perennial (MAX1 - ) species of the genus L. The chloroplast genomes were annotated.