Publications by authors named "Ok-Sun Kim"

Background: Lake Bonney, which is divided into a west lobe (WLB) and an east lobe (ELB), is a perennially ice-covered lake located in the McMurdo Dry Valleys of Antarctica. Despite previous reports on the microbial community dynamics of ice-covered lakes in this region, there is a paucity of information on the relationship between microbial genomic diversity and associated nutrient cycling. Here, we applied gene- and genome-centric approaches to investigate the microbial ecology and reconstruct microbial metabolic potential along the depth gradient in Lake Bonney.

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Subtercola boreus K300 is a novel psychrophilic strain that was isolated from permanently cold groundwater in Finland and has also been found in several places in Antarctica including lake, soil, and rocks. We performed genomic and transcriptomic analyses of 5 strains from Antarctica and a type strain to understand their adaptation to different environments. Interestingly, the isolates from rocks showed a low growth rate and smaller genome size than strains from the other isolation sources (lake, soil, and groundwater).

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Glaciers, formed from the gradual accumulation of snow, can be continuous records representing past environments and recognized as a time capsule of our planetary evolution. Due to extremely harsh conditions, glacial ice has long been considered an uninhabitable ecosystem for microorganisms to sustain their life. However, recent developments in microbiological analysis techniques revealed the presence of unexpectedly diverse microbial strains.

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Pedobacter jejuensis TN23 was isolated from soil from Terra Nova Bay, Victoria Land, Antarctica. The assembled draft genome size is 4,795,808 bp, and it contains a total of 4,095 genes with 3,970 coding sequences, including genes putatively involved in the degradation of chitin.

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sp. strain BTF04, a pink-pigmented psychrotolerant bacterium, was isolated from freshwater on Barton Peninsula, King George Island, Antarctica. Here, we report the assembled draft genome sequence of sp.

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Arthrobacter oryzae TNBS02 was isolated from soil at Terra Nova Bay of Victoria Land, Antarctica. The genome consists of a chromosome with 4,248,670 bp which contains a total of 3,994 genes. It was identified that this strain has many heavy metal resistance genes similar to other strains isolated from contaminated environments.

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The harsh conditions in Victoria Land, Antarctica have formed a simple ecosystem dominated by microbes that use rocks as shelters to avoid environmental stressors. The area is composed of basement rocks that illustrate the history of complex deformation, thus it is highly valuable not only in perspectives of geology but also in biological aspects. Because this region is inhospitable to higher-level organisms and receives least external influences, it can be an ideal environment to investigate the relationship between rock-inhabiting bacterial communities and environmental factors.

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Article Synopsis
  • - The study investigates the use of O-2-F-fluoroethyl-l-tyrosine ([F]FET) PET imaging to evaluate the effectiveness of the anti-angiogenic drug bevacizumab in treating glioblastoma (GBM) in a mouse model.
  • - In the experiment, only [F]FET uptake demonstrated a significant decrease in treated mice compared to controls, indicating its sensitivity in monitoring treatment response, while other imaging methods did not show significant correlations with survival time.
  • - The findings suggest that [F]FET PET imaging is a valuable tool for predicting treatment outcomes in GBM and could improve the assessment of anti-angiogenic therapies in future research.
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This study was conducted on 60 male adult technicians in the worksite to examine the impact of the obesity management program on their eating habits, exercise self-efficacy, quality of life, and body components. This was a nonrandomized pretest and posttest intervention study. The obesity management program was applied for 16 weeks on diet education, exercise, and counseling provided by the occupational health nurse in the worksite.

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Background: In South Korea, population aging is advancing at a more rapid rate in rural areas than urban areas, leading to a particularly high percentage of rural-dwelling older adults.

Purpose: The aim of this study was to examine and compare health promoting behaviors, depression, and life satisfaction between rural-dwelling older adults who live, respectively, in group homes and at home.

Methods: A cross-sectional descriptive study design was employed.

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We report here the complete genome sequence of PAMC 27463 isolated from a freshwater lake on Barton Peninsula on King George Island, Antarctica. The genome consists of a chromosome with 6,274,078 bp which contains 5,585 genes, including 121 RNA genes.

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Antimicrobial-producing, cold-adapted microorganisms have great potential for biotechnological applications in food, pharmaceutical, and cosmetic industries. Pseudomonas antarctica PAMC 27494, a psychrophile exhibiting antimicrobial activity, was isolated from an Antarctic freshwater sample. Here we report the complete genome of P.

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Background/objectives: Chewing difficulty is a factor contributing to a poor nutritional status in the elderly. The aim of this study was to examine disparities in food and nutrition intakes among Korean elderly people with and without chewing difficulty.

Subjects/methods: This study utilized data from the sixth Korea National Health and Nutrition Examination Survey conducted in 2013.

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Perennially ice-covered lakes in the McMurdo Dry Valleys, Antarctica, are chemically stratified with depth and have distinct biological gradients. Despite long-term research on these unique environments, data on the structure of the microbial communities in the water columns of these lakes are scarce. Here, we examined bacterial diversity in five ice-covered Antarctic lakes by 16S rRNA gene-based pyrosequencing.

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Article Synopsis
  • Soil is a significant reservoir for antibiotic resistance genes (ARGs), which pose environmental risks that are not yet fully understood.
  • A study collected 62 soil samples over three years from two Antarctic research stations to analyze the presence and levels of ARGs and mobile genetic elements (MGEs) using a specialized qPCR array.
  • The findings indicate that while low levels of ARGs were present, seven specific ARGs were widely distributed across samples, and human activity, along with soil properties like organic carbon and particle size, influenced the abundance of these resistance genes.
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Cryobacterium arcticum PAMC 27867, a psychrotolerant, Gram-positive bacterium, was isolated from a sedimentary rock sample collected at Eureka Spurs in northern Victoria Land, Antarctica. Here, we report the genome sequence of C. arcticum PAMC 27867.

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Psychrobacter alimentarius PAMC 27889, a Gram-negative, psychrophilic bacterium, was isolated from an Antarctic rock sample. Here, we report the complete genome of P. alimentarius PAMC 27889, which has the nonmevalonate methylerythritol phosphate pathway of terpenoid biosynthesis and a complete gene cluster for benzoate degradation.

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Mesenchymal stem cells (MSCs) have been identified in multiple types of tissue and exhibit characteristic self-renewal and multi-lineage differentiation abilities. However, the possibility of oncogenic transformation after transplantation is concerning. In this study, we investigated the tumorigenic potential of umbilical cord blood-derived MSCs (hUCB-MSCs) relative to MRC-5 and HeLa cells (negative and positive controls, respectively) both in vitro and in vivo.

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Pedobacter cryoconitis PAMC 27485, an aerobic, Gram-negative, facultatively psychrophilic bacterium, was isolated from Antarctic soil. Here we report the complete genome of P. cryoconitis PAMC 27485, which contains a type II CRISPR-Cas system and genes encoding useful enzymes (e.

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Article Synopsis
  • The study focuses on microbial communities in the soils of continental Antarctica, revealing that abiotic factors, rather than biotic interactions, largely influence these communities in unexplored ice-free regions.
  • Researchers analyzed soil bacterial communities near Terra Nova Bay using pyrosequencing, identifying six dominant bacterial phyla whose abundances varied significantly based on location.
  • Key environmental variables, particularly pH and water content, were found to strongly affect bacterial community structures, highlighting how these microbes adapt to diverse soil conditions under extreme environmental stress.
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  • The study investigates the composition of lichen ecosystems, focusing on the relationships between the algal (photobiont) and fungal (mycobiont) components in lichen species from King George Island, Antarctica.
  • Researchers used pyrosequencing techniques to analyze the genetic structures of both algae and fungi in lichens, revealing a diverse community of algal species within each lichen sample.
  • Findings indicate that the major algal communities were closely tied to specific fungal species, with the lichen fungi belonging to various classes within Ascomycota and Basidiomycota, while also showing that growth forms or substrates did not significantly influence these relationships.
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The subarctic region is highly responsive and vulnerable to climate change. Understanding the structure of subarctic soil microbial communities is essential for predicting the response of the subarctic soil environment to climate change. To determine the composition of the bacterial community and its relationship with soil properties, we investigated the bacterial community structure and properties of surface soil from the moist acidic tussock tundra in Council, Alaska.

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Article Synopsis
  • * Findings revealed that elderly individuals in facilities prioritized physical pain relief for a comfortable death, while those at home emphasized the need for psychological stability.
  • * The majority of participants believed DNR orders are sometimes necessary, with slightly more support among those in facilities compared to those at home, suggesting different needs for nursing interventions based on living situation.
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  • * A significant finding was the negative correlation between temperature and salinity, leading researchers to hypothesize that melting ice reduces water salinity.
  • * Bacterial community analysis revealed distinct groups in three habitats—surface seawater, ice core, and melting pond—predominantly featuring Alphaproteobacteria, which varied in relation to salinity changes and supported the idea of local bacterial populations.
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