[Advanced approaches to studying the population diversity of marine fishes: new opportunities for fisheries control and management].

Recent conceptual and technological advances now enable fisheries geneticists to detect and monitor the dynamics and distribution of marine fish populations more effectively than ever before. Information on the extent of genetically-based divergence among populations, so-called "population diversity", is crucial in the quest to manage exploited living resources sustainably since it endows evolutionary potential in the face of environmental change. The generally limited dialogue between scientists, fisheries managers and policy makers, however, continues to constrain integration of population genetic data into tangible policy applications.

Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake.

The growing accessibility to genomic resources using next-generation sequencing (NGS) technologies has revolutionized the application of molecular genetic tools to ecology and evolutionary studies in non-model organisms. Here we present the case study of the European hake (Merluccius merluccius), one of the most important demersal resources of European fisheries. Two sequencing platforms, the Roche 454 FLX (454) and the Illumina Genome Analyzer (GAII), were used for Single Nucleotide Polymorphisms (SNPs) discovery in the hake muscle transcriptome.

Genome-wide analysis of mitral valve disease in Cavalier King Charles Spaniels.

The Cavalier King Charles Spaniel (CKCS) is prone to severe early onset mitral valve disease. In this study, 36 purebred CKCS dogs were evaluated for mitral valve murmur and divided into early and late onset groups. A genome-wide genetic approach was used to assess whether the condition is determined by a small number of genetic factors.

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 June 2011-31 July 2011.

This article documents the addition of 112 microsatellite marker loci and 24 pairs of single nucleotide polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Agelaius phoeniceus, Austrolittorina cincta, Circus cyaneus, Circus macrourus, Circus pygargus, Cryptocoryne × purpurea Ridl. nothovar.

Cross-bridge apparent rate constants of human gallbladder smooth muscle.

This paper studies human gallbladder (GB) smooth muscle contractions. A two-state cross-bridge model was used to estimate the apparent attachment and detachment rate constants, as well as increased Ca2+ concentration from the peak active stress during the isometric contraction. The active stress was computed from a mechanical model based entirely on non-invasive routine ultrasound scans.

The effect of alcohol administration on human timing: a comparison of prospective timing, retrospective timing and passage of time judgements.

Previous research suggests that human timing may be affected by alcohol administration. The current study aimed to expand on previous research by examining the effect of alcohol on prospective timing, retrospective timing and passage of time judgements. A blind between-subjects design was employed in which participants were either administered 0 g of alcohol per kilogramme of body weight (placebo), 0.

Genetic data from 15 STR loci for forensic individual identification and parentage analyses in UK domestic dogs (Canis lupus familiaris).

Eighteen STR loci and one sex determination locus present in the Finnzymes Canine 2.1 STR Multiplex Reagent Kit were screened in the UK dog population providing allele frequencies and population genetic parameters necessary for the application of STRs to forensic genetic casework. A total of 375 dogs were genotyped, including representative samples from each of twelve breeds used to evaluate Hardy-Weinberg equilibrium and calculate inter-population pairwise F(ST) values.

Evaluation of approaches for identifying population informative markers from high density SNP chips.

Background: Genetic markers can be used to identify and verify the origin of individuals. Motivation for the inference of ancestry ranges from conservation genetics to forensic analysis. High density assays featuring Single Nucleotide Polymorphism (SNP) markers can be exploited to create a reduced panel containing the most informative markers for these purposes.

The role of executive functions in human prospective interval timing.

Human timing is thought to be based on the output of an internal clock. Whilst the functioning of this clock is well documented, it is unclear which other cognitive resources may moderate timing. Brown (2006) and Rattat (2010) suggest that the central executive of working memory may be recruited during timing.

Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges.

Recent improvements in the speed, cost and accuracy of next generation sequencing are revolutionizing the discovery of single nucleotide polymorphisms (SNPs). SNPs are increasingly being used as an addition to the molecular ecology toolkit in nonmodel organisms, but their efficient use remains challenging. Here, we discuss common issues when employing SNP markers, including the high numbers of markers typically employed, the effects of ascertainment bias and the inclusion of nonneutral loci in a marker panel.

Unlocking the potential of genomic technologies for wildlife forensics.

Wildlife crime enforcement is increasingly relying on genetic techniques to deliver forensic evidence to investigators. Forensic DNA applications require robust molecular markers, informative at the level of the species, population and individual, in a wide range of taxa. Within species, single-nucleotide polymorphisms (SNPs) have long been recognized as offering many potential advantages over traditional microsatellite markers; however, the best methods for their discovery, validation and genotyping in non-model species remain an area of novel research and much discussion.

Modality effects in memory for basic stimulus attributes: a temporal and nontemporal comparison.

Previous research suggests that there are significant differences in the operation of reference memory for stimuli of different modalities, with visual temporal entries appearing to be more durable than auditory entries (Ogden, Wearden, & Jones, 2008 , 2010). Ogden et al. ( 2008 , 2010 ) demonstrated that when participants were required to store multiple auditory temporal standards over a period of delay there was significant systematic interference to the representation of the standard characterized by shifts in the location of peak responding.

On the third- and fourth-order constants of incompressible isotropic elasticity.

Consider the constitutive law for an isotropic elastic solid with the strain-energy function expanded up to the fourth order in the strain and the stress up to the third order in the strain. The stress-strain relation can then be inverted to give the strain in terms of the stress with a view to considering the incompressible limit. For this purpose, use of the logarithmic strain tensor is of particular value.

A mechanical model for CCK-induced acalculous gallbladder pain.

This study investigates the potential correlation between acalculous biliary pain and mechanical stress during the bile-emptying phase. This study is built on the previously developed mathematical model used to estimate stress in the gallbladder wall during emptying [Li, W. G.

Forensic science, genetics and wildlife biology: getting the right mix for a wildlife DNA forensics lab.

Wildlife DNA forensics is receiving increasing coverage in the popular press and has begun to appear in the scientific literature in relation to several different fields. Recognized as an applied subject, it rests on top of very diverse scientific pillars ranging from biochemistry through to evolutionary genetics, all embedded within the context of modern forensic science. This breadth of scope, combined with typically limited resources, has often left wildlife DNA forensics hanging precariously between human DNA forensics and academics keen to seek novel applications for biological research.

In vivo serotonin-sensitive binding of [11C]CUMI-101: a serotonin 1A receptor agonist positron emission tomography radiotracer.

Positron emission tomography studies of 5-hydroxytryptamine (5-HT)(1A) receptors have hitherto been limited to antagonist radiotracers. Antagonists do not distinguish high/low-affinity conformations of G protein-coupled receptors and are less likely to be sensitive to intrasynaptic serotonin levels. We developed a novel 5-HT(1A) agonist radiotracer [(11)C]CUMI-101.

Assessing the functional significance of ecstasy-related memory deficits using a virtual paradigm.

Rationale/objectives: Previous research shows that the use of ecstasy results in working memory and executive impairments in some users. The present study sought to assess the functional significance of such deficits using a virtual reality task.

Methods: Twenty-three ecstasy-polydrug users and 26 nonusers were recruited.

Higher serotonin 1A binding in a second major depression cohort: modeling and reference region considerations.

Background: Serotonin 1A receptors (5-HT(1A)) are implicated in major depressive disorder (MDD). We previously reported higher 5-HT(1A) binding potential (BP(F)) in antidepressant naive MDD subjects compared with control subjects, while other studies report lower BP(ND). Discrepancies can be related to differences in study population or methodology.

Empirical Bayesian estimation in graphical analysis: a voxel-based approach for the determination of the volume of distribution in PET studies.

Introduction: Total volume of distribution (V(T)) determined by graphical analysis (GA) of PET data suffers from a noise-dependent bias. Likelihood estimation in GA (LEGA) eliminates this bias at the region of interest (ROI) level, but at voxel noise levels, the variance of estimators is high, yielding noisy images. We hypothesized that incorporating LEGA V(T) estimation in a Bayesian framework would shrink estimators towards prior means, reducing variability and producing meaningful and useful voxel images.

Third- and fourth-order elasticities of biological soft tissues.

In the theory of weakly nonlinear elasticity, Hamilton et al. [J. Acoust.