Publications by authors named "Noha Youssef"

Objective: The purpose of this study was to compare the strength and endurance of the trunk muscles in women with chronic ankle instability (CAI) compared with those who do not have CAI.

Methods: Sixty-two women were assigned into 2 equal groups of 31; group A included women with CAI and group B included healthy women. Peak torques per body weight of the trunk extensors and flexors were measured using a Biodex System 3 Isokinetic Dynamometer.

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Anaerobic gut fungi (AGF, ) inhabit the alimentary tract of herbivores. Although strict anaerobes, studies have suggested their capacity to retain viability after various durations of air exposure. It is currently unclear whether AGF can actively grow, and not merely survive, in redox potentials (E) higher than those encountered in the herbivorous gut.

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Radiation enteritis is a frequently encountered issue for patients receiving radiotherapy and has a significant impact on cancer patients' quality of life. The gut microbiota plays a pivotal role in intestinal function, yet the impact of irradiation on gut microorganisms is not fully understood. This study explores the gastroprotective effect and gut microbiome-modulating potential of ubiquinol (Ubq), the reduced form of the powerful antioxidant CoQ-10.

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Members of the phylum Acidobacteriota inhabit a wide range of ecosystems including soils. We analyzed the global patterns of distribution and habitat preferences of various Acidobacteriota lineages across major ecosystems (soil, engineered, host-associated, marine, non-marine saline and alkaline, and terrestrial non-soil ecosystem) in 248,559 publicly available metagenomic datasets. Classes Terriglobia, Vicinamibacteria, Blastocatellia, and Thermoanaerobaculia were highly ubiquitous and showed clear preference to soil over non-soil habitats, class Polarisedimenticolia showed comparable ubiquity and preference between soil and non-soil habitats, while classes Aminicenantia and Holophagae showed preferences to non-soil habitats.

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Macronutrients play a vital role in host immunity and can influence host-pathogen dynamics, potentially through dietary effects on gut microbiota. To increase our understanding of how dietary macronutrients affect physiology and gut microbiota and investigate whether feeding behaviour is influenced by an immune threat, we conducted two experiments. First, we determined whether zebra finches (Taeniopygia guttata) exhibit shifts in physiology and gut microbiota when fed diets differing in macronutrient ratios.

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Article Synopsis
  • Anaerobic gut fungi (AGF) are mostly found in the gastrointestinal tracts of herbivores, and while their role in mammals is well-known, their presence in non-mammals like tortoises is less documented.
  • Research indicates that tortoises host a unique AGF community with three new genera, estimated to have diverged from their ancestors over 104-112 million years ago, suggesting an early evolution of symbiosis between animals and AGF.
  • Tortoise-associated AGF show limited ability to metabolize plant materials due to fewer carbohydrate-active enzymes and reduced gene exchange compared to AGF from mammals, leading to a diminished capacity for breaking down cellulose.
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Green zinc oxide nanoparticles (ZnO NPs) synthesized using as a reducing agent were investigated as ecofriendly adsorbents for the removal of the antibiotics ciprofloxacin (CIP) and tetracycline (TET) from water. Green ZnO NPs were synthesized using a rapid novel approach that did not require annealing or calcination at high temperatures to produce mesoporous NPs with a size range of 37.36-71.

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An enrichment of sulfidic sediments from Zodletone spring was sequenced as a metagenome. Draft genomes representing Cloacimonadota, Deltabacterota, Firmicutes, and Patescibacteria were binned and annotated and will aid functional genomics and cultivation efforts.

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The rumen houses a diverse community that plays a major role in the digestion process in ruminants. Anaerobic gut fungi (AGF) are key contributors to plant digestion in the rumen. Here, we present a global amplicon-based survey of the rumen AGF mycobiome by examining 206 samples from 15 animal species, 15 countries, and 6 continents.

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The anaerobic gut fungi (AGF) inhabit the alimentary tracts of herbivores. In contrast to placental mammals, information regarding the identity, diversity, and community structure of AGF in marsupials is extremely sparse. Here, we characterized AGF communities in 61 fecal samples from 10 marsupial species belonging to four families in the order Diprotodontia: Vombatidae (wombats), Phascolarctidae (koalas), Phalangeridae (possums), and Macropodidae (kangaroos, wallabies, and pademelons).

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The manuscript explores the secretion bacterial community of carrion and burying beetles of the central plains of North America. A core secretion microbiome of 11 genera is identified. The host subfamily, secretion type, and collection locality significantly affects the secretion microbiome.

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The COVID-19 series is obviously one of the most volatile time series with lots of spikes and oscillations. The conventional integer-valued auto-regressive time series models (INAR) may be limited to account for such features in COVID-19 series such as severe over-dispersion, excess of zeros, periodicity, harmonic shapes and oscillations. This paper proposes alternative formulations of the classical INAR process by considering the class of high-ordered INAR models with harmonic innovation distributions.

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Despite their role in host nutrition, the anaerobic gut fungal (AGF) component of the herbivorous gut microbiome remains poorly characterized. Here, to examine global patterns and determinants of AGF diversity, we generate and analyze an amplicon dataset from 661 fecal samples from 34 mammalian species, 9 families, and 6 continents. We identify 56 novel genera, greatly expanding AGF diversity beyond current estimates (31 genera and candidate genera).

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Establishment of microbial communities in neonatal calves is vital for their growth and overall health. While this process has received considerable attention for bacteria, our knowledge on temporal progression of anaerobic gut fungi (AGF) in calves is lacking. Here, we examined AGF communities in faecal samples from six dairy cattle collected at 24 different time points during the pre-weaning (days 1-48), weaning (days 48-60), and post-weaning (days 60-360) phases.

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The anaerobic gut fungi (AGF, ) represent a basal zoosporic phylum within the kingdom . Twenty genera are currently described, all of which were isolated from the digestive tracts of mammalian herbivores. Here, we report on the isolation and characterization of novel AGF taxa from faecal samples of tortoises.

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sp. strain ZS1 is an obligate anaerobic, sulfate-reducing member of the from Zodletone Spring, an anoxic sulfide-rich spring in southwestern Oklahoma. Its complete genome was sequenced using a combination of Illumina and Oxford Nanopore platforms and encodes 3,364 proteins and 81 RNAs on a single chromosome.

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Article Synopsis
  • The study investigates the phylogenetic relationships of anaerobic gut fungi (AGF) using transcriptomic datasets from 14 genera, revealing four distinct supra-genus clades and identifying the earliest evolving genus.
  • It combines phylogenomic analysis with quantitative amino acid identity (AAI) data to propose a new taxonomic framework, placing 14 out of 20 AGF genera into four families while some genera remain unresolved.
  • The findings highlight the importance of RPB1 as a useful molecular marker for classifying AGF and provide a scientifically-grounded approach for their taxonomy.
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Halophilic archaea are polyextremophiles with the ability to withstand fluctuations in salinity, high levels of ultraviolet radiation, and oxidative stress, allowing them to survive in a wide range of environments and making them an excellent model for astrobiological research. Natrinema altunense 4.1R is a halophilic archaeon isolated from the endorheic saline lake systems, Sebkhas, located in arid and semi-arid regions of Tunisia.

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Anaerobic fungi from the herbivore digestive tract () are primary lignocellulose modifiers and hold promise for biotechnological applications. Their molecular detection is currently difficult due to the non-specificity of published primer pairs, which impairs evolutionary and ecological research with environmental samples. We developed and validated a -specific PCR primer pair targeting the D2 region of the ribosomal large subunit suitable for screening, quantifying, and sequencing.

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Article Synopsis
  • - Establishing a solid taxonomic framework is essential for effective communication and reproducibility among scientists, particularly in the study of anaerobic fungi (Neocallimastigomycota).
  • - Clear criteria for characterizing and assigning taxonomic ranks are necessary to address challenges related to the isolation and preservation of these fungi, which are often poorly documented.
  • - The text offers specific morphological, microscopic, phylogenetic, and phenotypic criteria for evaluating new Neocallimastigomycota isolates and recommends a comprehensive ranking system for naming new taxa.
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As tick-borne diseases continue to increase across North America, current research strives to understand how the tick microbiome may affect pathogen acquisition, maintenance, and transmission. Prior high throughput amplicon-based microbial diversity surveys of the widespread tick Dermacentor variabilis have suggested that life stage, sex, and geographic region may influence the composition of the tick microbiome. Here, adult D.

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Members of the anaerobic gut fungi () reside in the rumen and alimentary tract of larger mammalian and some reptilian, marsupial and avian herbivores. The recent decade has witnessed a significant expansion in the number of described genera and species. However, the difficulties associated with the isolation and maintenance of strains has greatly complicated comparative studies to resolve inter- and intra-genus relationships.

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Life emerged and diversified in the absence of molecular oxygen. The prevailing anoxia and unique sulfur chemistry in the Paleo-, Meso-, and Neoarchean and early Proterozoic eras may have supported microbial communities that differ from those currently thriving on the earth's surface. Zodletone spring in southwestern Oklahoma represents a unique habitat where spatial sampling could substitute for geological eras namely, from the anoxic, surficial light-exposed sediments simulating a preoxygenated earth to overlaid water column where air exposure simulates oxygen intrusion during the Neoproterozoic era.

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Serratia marcescens is a Gram-negative bacterium with both environmental and host-associated strains. Pigmentation is reportedly inversely correlated with infection frequency, and prodigiosin is one of Serratia pigments that has medical and industrial applications. Here, we report the draft genome sequence of prodigiosin-hyperproducing Serratia marcescens strain N2, isolated from Cairo, Egypt.

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Cultured are predominantly aerobic soil inhabitants, characterized by their highly coordinated predation and cellular differentiation capacities. Little is currently known regarding yet-uncultured from anaerobic, nonsoil habitats. We analyzed genomes representing one novel order (o__JAFGXQ01) and one novel family (f__JAFGIB01) in the from an anoxic freshwater spring (Zodletone Spring) in Oklahoma, USA.

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