Publications by authors named "Nital Mehta"

Article Synopsis
  • A point mutation (Y54F) in streptavidin significantly decreases its binding affinity to biotin by 75-fold, mainly due to a 73-fold increase in the rate of dissociation.
  • The mutation replaces the hydroxyl group of Y54 with a water molecule, which does not alter the immediate structure but affects nearby residues, particularly increasing atomic fluctuations in W79 that contact biotin.
  • This increased fluctuation in W79 weakens its interaction with biotin, highlighting how alterations in protein dynamics, even far from the binding site, can influence ligand binding despite minimal changes in the overall structure.
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Quantum mechanical/molecular mechanics (QM/MM) calculations were performed on the neutral, anionic, and dianionic forms of Pheophytin-a (Pheo-a) in N,N-dimethyl formamide (DMF) in order to calculate the absolute free energy of reduction of Pheo-a in solution. The geometry of the solvated species was optimized by restricted open-shell density functional treatment (ROB3LYP) using the 6-31G(d) basis set for the molecular species while the primary solvent shell consisting of 45 DMF molecules was treated by the MM method using the universal force field (UFF). Electronic energies of the neutral, anionic, and dianionic species were obtained by carrying out single point density functional theory (DFT) calculations using the 6-311+G(2d,2p) basis set on the respective ONIOM optimized geometries.

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A physicochemical interpretation of a recently formulated temperature-dependent, steady-state rate expression for the production of glucose equivalent in C(4) plants is given here. We show that the rate equation is applicable to a wide range of C(4) plants.

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We prepare a temperature-dependent formulation of the integrated kinetics for the overall process of photosynthesis in eukaryotic cells. To avoid complexity, the C4 plants are chosen because their rate of photosynthesis is independent of the partial pressure of O2. A systematically simplified but comprehensive scheme for both light and dark reactions is considered.

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