Publications by authors named "Nikolaus P Ernsting"

Article Synopsis
  • The study focuses on intrinsically disordered proteins (IDPs) and how their lack of fixed structure affects their interaction with other molecules, specifically regarding dynamics during binding.
  • Researchers examined two IDPs, IBB and Nup153FG, which interact with the same nuclear transport receptor (Importinβ) but use different mechanisms for binding.
  • The findings reveal that the behavior of water at the interface of these protein complexes changes with binding: Nup153FG maintains water dynamics, while IBB shows a slowdown, highlighting the importance of these dynamics in biological functions like nuclear transport.
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Spontaneous polarization of a nonpolar molecule upon photoexcitation (the sudden polarization effect) earlier discussed for 90°-twisted alkenes is observed and calculated for planar ring-fluorinated stilbenes, trans-2,3,5,6,2',3',5',6'-octofluorostilbene (tF2356) and trans-2,3,4,5,6,2',3',4',5',6'-decafluorostilbene (tF23456). Due to the fluorination, Franck-Condon states S and S are dominated by the quasi-degenerate HOMO-1 → LUMO and HOMO-2 → LUMO excitations, while their interaction gives rise to a symmetry-broken zwitterionic S state. After optical excitation of tF2356, one observes an ultrafast (∼0.

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We monitor the time-dependent Stokes shift (TDSS) of fluorescence from the zwitterionic probe N-methyl-6-oxyquinolinium betaine in water. A spectral relaxation time τ = 0.57 ps (at 20.

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A 13mer DNA duplex containing the artificial 4-aminophthalimide:2,4-diaminopyrimidine (4AP:DAP) base pair in the central position was characterized by optical and NMR spectroscopy. The fluorescence of 4AP in the duplex has a large Stokes shift of Δλ=124 nm and a quantum yield of Φ =24 %. The NMR structure shows that two interstrand hydrogen bonds are formed and confirms the artificial base pairing.

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In the photoisomerization path of stilbene, a perpendicular state P on the S potential energy surface is expected just before internal conversion through a conical intersection S/S. For decades the observation of P was thwarted by a short lifetime τ in combination with slow population flow over a barrier. But these limitations can be overcome by ethylenic substitution.

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Sum frequency mixing of fluorescence and ∼1300 nm gate pulses, in a thin β-barium borate crystal and non-collinear type II geometry, is quantified as part of a femtosecond fluorimeter [X.-X. Zhang et al.

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β-Carotene in n-hexane was examined by femtosecond transient absorption and stimulated Raman spectroscopy. Electronic change is separated from vibrational relaxation with the help of band integrals. Overlaid on the decay of S1 excited-state absorption, a picosecond process is found that is absent when the C9 -methyl group is replaced by ethyl or isopropyl.

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Raman scattering with stimulating femtosecond probe pulses (FSR) was used to observe vibrational activity of all-trans β-carotene in n-hexane. The short-lived excited electronic state S2 was accessed in two ways: (i) by transient FSR after an actinic pulse to populate the S2 state, exploiting resonance from an Sx ← S2 transition, and (ii) by FSR without actinic excitation, using S2 ↔ S0 resonance exclusively and narrow-band Raman/broad-band femtosecond probe pulses only. The two approaches have nonlinear optical susceptibilities χ((5)) and χ((3)), respectively.

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Solvation and rotational dynamics of 4-aminophthalimide (4AP) in four ionic liquids (ILs) are measured using a combination of fluorescence upconversion spectroscopy and time-correlated single photon counting. These data are compared with previously reported data for coumarin 153 (C153) to investigate the probe dependence of solvation dynamics. No fast component (<15 ps) in the fluorescence anisotropy is observed with 4AP.

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The terahertz (THz) absorption bands of biomolecular hydration layers are generally swamped by absorption from bulk water. Using the disaccharide trehalose, we show that this limitation can be overcome by attaching a molecular probe. By time-resolving the fluorescence shift of the probe, a local THz spectrum is obtained.

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Solvation energies, rotation times, and 100 fs to 20 ns solvation response functions of the solute coumarin 153 (C153) in mixtures of 1-butyl-3-methylimidazolium tetrafluoroborate ([Im41][BF4]) + acetonitrile (CH3CN) at room temperature (20.5 °C) are reported. Available density, shear viscosity, and electrical conductivity data at 25 °C are also collected and parametrized, and new data on refractive indices and component diffusion coefficients presented.

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The solvation dynamics of molecular probes is studied by broad-band fluorescence upconversion. The time-dependent position of the S1 → S0 emission band or of a vibronic line shape is measured with ~80 fs, 10 cm(-1) resolution. Polar solutes in acetonitrile and acetone, when excited into S1 with excess vibrational energy, show a dynamic Stokes shift which extends to the red beyond the quasistationary state.

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Excited-state protonation of riboflavin in the oxidized form is studied in water. In the -1 < pH < 2 range, neutral and N(1)-protonated riboflavin coexist in the electronic ground state. Transient absorption shows that the protonated form converts to the ground state in <40 fs after optical excitation.

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It was shown recently that a simple dielectric continuum model predicts the integral solvation time of a dipolar solute ⟨τsolv⟩ to be inversely proportional to the electrical conductivity σ0 of an ionic solvent or solution. In this Letter, we provide a more general derivation of this connection and show that available data on coumarin 153 (C153) in ionic liquids generally support this prediction. The relationship between solvation time and conductivity can be expressed by ln(⟨τsolv⟩/ps) = 4.

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The 4-aminophthalimide C-nucleoside 1 was designed as an isosteric DNA base surrogate, and a synthetic route to nucleoside 1 together with the 2,4-diaminopyrimidine-C-nucleoside 2 as a potential counterbase was worked out. The key steps in both synthetic routes represent a stereoselective Heck-type palladium-catalyzed cross-coupling with 2'-deoxyribofuranoside glycal followed by stereoselective reduction with NaBH(OAc)3. The nucleoside 1 shows a solvatofluorochromic behavior and significantly red-shifted fluorescence in solvents of high polarity and with hydrogen bonding capabilities.

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The photoisomerisation of 1,1'-diethyl-2,2'-pyridocyanine, regarded by Brooker as the simplest cyanine, is examined in methanol by time-resolved experiments and PCM/TD-CAM-B3LYP calculations. Femtosecond transient absorption, fluorescence upconversion, and stimulated Raman scattering, all with broadband coverage, provide a panoramic view of the photoreaction. On the computational side, evolving distributions on an S(1) minimum-energy path are obtained by solving the Smoluchowski equation for drift and diffusion of torsional motion.

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The dynamic Stokes shift of coumarin 153, measured with a combination of broad-band fluorescence upconversion (80 fs resolution) and time-correlated single photon counting (to 20 ns), is used to determine the complete solvation response of 21 imidazolium, pyrrolidinium, and assorted other ionic liquids. The response functions so obtained show a clearly bimodal character consisting of a subpicosecond component, which accounts for 10-40% of the response, and a much slower component relaxing over a broad range of times. The times associated with the fast component correlate with ion mass, confirming its origins in inertial solvent motions.

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The complete solvation response of coumarin 153 (C153) has been determined over the range 10(-13)-10(-8) s in a variety of ionic liquids by combining femtosecond broad-band fluorescence upconversion and picosecond time-correlated single photon counting measurements. These data are used together with recently reported dielectric data in eight ionic liquids to test the accuracy of a simple continuum model for predicting solvation dynamics. In most cases the features of the solvation response functions predicted by the dielectric continuum model are similar to the measured dynamics of C153.

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The common route to link quinolinium and pyridinium fluorophores to biomolecules via bromoacetic acid has failed in labeling the disaccharide trehalose with N-methyl-6-oxyquinolinium betaine: the unexpected, extremely high instability of the N-carboxymethyl ester was overcome by direct N-alkylation of the quinoline derivative with trehalose triflate.

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Time-dependent Stokes shifts (TDSS) were measured for diverse polarity probes in water, heavy water, methanol, and benzonitrile, by broadband fluorescence up-conversion with 85 fs time resolution. In water the spectral dynamics is solute-independent and quantitatively described by simple dielectric continuum theory of solvation. In methanol the slower part of the TDSS is solute-dependent.

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Photoisomerization around a central fulvene-type double bond is known to proceed through a conical intersection at the perpendicular geometry. The process is studied with an indenylidene-dihydropyridine model compound, allowing the use of visible excitation pulses. Transient absorption shows that 1) stimulated emission shifts to the red and loses oscillator strength on a 50 fs timescale, and 2) bleach recovery is highly nonexponential and not affected by solvent viscosity or methyl substitution at the dihydropyridine ring.

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