Sharp focusing of partially coherent Bessel-correlated beams by a graded-index lens.

The nonparaxial focusing of partially coherent Bessel-correlated beams carrying vortices by a graded-index lens is investigated using the decomposition of the incident field into coherent modes and the quantum mechanical operator method. The influence of the coherence state and the incident beam aperture on tight focusing is analyzed. Our results show that a partially coherent Bessel-correlated beam can be focused into a spot of smaller size than coherent light.

Actively transcribed rDNA and distal junction (DJ) sequence are involved in association of NORs with nucleoli.

Although they are organelles without a limiting membrane, nucleoli have an exclusive structure, built upon the rDNA-rich acrocentric short arms of five human chromosomes (nucleolar organizer regions or NORs). This has raised the question: what are the structural features of a chromosome required for its inclusion in a nucleolus? Previous work has suggested that sequences adjacent to the tandemly repeated rDNA repeat units (DJ, distal junction sequence) may be involved, and we have extended such studies by addressing several issues related to the requirements for the association of NORs with nucleoli. We exploited both a set of somatic cell hybrids containing individual human acrocentric chromosomes and a set of Human Artificial Chromosomes (HACs) carrying different parts of a NOR, including an rDNA unit or DJ or PJ (proximal junction) sequence.

Nonparaxial Propagation of Bessel Correlated Vortex Beams in Free Space.

The nonparaxial propagation of partially coherent beams carrying vortices in free space is investigated using the method of decomposition of the incident field into coherent diffraction-free modes. Modified Bessel correlated vortex beams with the wavefront curvature are introduced. Analytical expressions are presented to describe the intensity distribution and the degree of coherence at different distances.

Assembly of Multiple Full-Size Genes or Genomic DNA Fragments on Human Artificial Chromosomes Using the Iterative Integration System.

Human artificial chromosomes (HACs) are gene delivery vectors that have been used for decades for gene functional studies. HACs have several advantages over viral-based gene transfer systems, including stable episomal maintenance in a single copy in the cell and the ability to carry up to megabase-sized genomic DNA segments. We have previously developed the alphoid -HAC, which has a single gene acceptor loxP site that allows insertion of an individual gene of interest using Chinese hamster ovary (CHO) hybrid cells.

Terpyridine platinum compounds induce telomere dysfunction and chromosome instability in cancer cells.

Telomerase/telomere-targeting therapy is a potentially promising approach for cancer treatment because even transient telomere dysfunction can induce chromosomal instability (CIN) and may be a barrier to tumor growth. We recently developed a dual-HAC (Human Artificial Chromosome) assay that enables identification and ranking of compounds that induce CIN as a result of telomere dysfunction. This assay is based on the use of two isogenic HT1080 cell lines, one carrying a linear HAC (containing telomeres) and the other carrying a circular HAC (lacking telomeres).

Small-Sized Interferometer with Fabry-Perot Resonators for Gravitational Wave Detection.

It is highly desirable to have a compact laser interferometer for detecting gravitational waves. Here, a small-sized tabletop laser interferometer with Fabry-Perot resonators consisting of two spatially distributed "mirrors" for detecting gravitational waves is proposed. It is shown that the spectral resolution of 10 cm can be achieved at a distance between mirrors of only 1-3 m.

The genomic structure of a human chromosome 22 nucleolar organizer region determined by TAR cloning.

The rDNA clusters and flanking sequences on human chromosomes 13, 14, 15, 21 and 22 represent large gaps in the current genomic assembly. The organization and the degree of divergence of the human rDNA units within an individual nucleolar organizer region (NOR) are only partially known. To address this lacuna, we previously applied transformation-associated recombination (TAR) cloning to isolate individual rDNA units from chromosome 21.

Transient expression of inactive RB in mesenchymal stem cells impairs their adipogenic potential and is associated with hypermethylation of the PPARγ2 promoter.

The retinoblastoma gene product (pRb) is a chromatin-associated protein that can either suppress or promote activity of key regulators of tissue-specific differentiation. We found that twelve weeks after transfection of the exogenous active (ΔB/X and Δр34) or inactive (ΔS/N) forms of RB into the 10T1/2 mesenchymal stem cells and clonal selection not a single cell line did contain exogenous RB, despite being G-418 resistant. However, the consequences of the transient production of exogenous RB had different effects on the cell fate.

p130 And pRb in the Maintenance of Transient Quiescence of Mesenchymal Stem Cells.

An effective regulation of quiescence plays a key role in the differentiation, plasticity, and prevention of stem cells from becoming malignant. The state of quiescence is being controlled by the pRb family proteins which show overlapping functions in cell cycle regulation; however, their roles in controlling the proliferation of mesenchymal stem cells (MSCs) remain to be understood. This study investigated the regulation of transient quiescence using growth curves, proliferation assay, the cytometric evaluation of cell cycle, Western blotting, and the electromobility gel shift assay (EMSA) on synchronized MSCs of the C3H10Т1/2 and control cells with different statuses of pRb proteins.

Large positive and negative Goos-Hänchen shifts near the surface plasmon resonance in subwavelength grating.

Diffraction of light of a visible spectral range by subwavelength metal gratings has been investigated experimentally and theoretically using rigorous electromagnetic calculations. It has been demonstrated that an effect of surface plasmon resonance (SPR), at which total absorption of light by metal grating can be observed, occurs under certain conditions. Large positive and negative Goos-Hänchen (GH) shifts occur near the SPR.

Human artificial chromosome (HAC) for measuring chromosome instability (CIN) and identification of genes required for proper chromosome transmission.

Chromosomal instability (CIN) is one of the characteristics of cancer inherent for tumor initiation and progression, which is defined as a persistent, high rate of gain/loss of whole chromosomes. In the vast majority of human tumors the molecular basis of CIN remains unknown. The development of a conceptually simple colony color sectoring assay that measures yeast artificial chromosome (YAC) loss provided a powerful genetic tool to assess the rate of chromosome mis-segregation and also identified 937 yeast genes involved in this process.

A novel assay to screen siRNA libraries identifies protein kinases required for chromosome transmission.

One of the hallmarks of cancer is hromosome stability (CIN), which leads to aneuploidy, translocations, and other chromosome aberrations. However, in the vast majority of human tumors the molecular basis of CIN remains unknown, partly because not all genes controlling chromosome transmission have yet been identified. To address this question, we developed an experimental high-throughput imaging (HTI) siRNA assay that allows the identification of novel CIN genes.

Ultrafast Dynamics of Electronically Excited Host-Guest Complexes of Cucurbiturils with Styryl Dyes.

The relaxation mechanism of electronically excited states of host-guest complexes between cucurbiturils (CB) and pyridinium styryl dyes is considered in detail on the basis of the recent results obtained by the up-conversion fluorescence technique. The addition of CB to aqueous dye solutions increases the longest fluorescence decay times from about 50 ps for the free dyes to 100-150 ps for the bound ones. This is attributed to the braking of intramolecular rotations around the single bonds of the styryl moiety that is provided by guest's displacement inside the cavity, whose driving force is a Coulombic interaction of the styryl dye cation and negatively charged CB portals.

Human Artificial Chromosome with Regulated Centromere: A Tool for Genome and Cancer Studies.

Since their description in the late 1990s, Human Artificial Chromosomes (HACs) bearing functional kinetochores have been considered as promising systems for gene delivery and expression. More recently a HAC assembled from a synthetic alphoid DNA array has been exploited in studies of centromeric chromatin and in assessing the impact of different epigenetic modifications on kinetochore structure and function in human cells. This HAC was termed the alphoid-HAC, as the synthetic monomers each contained a tetO sequence in place of the CENP-B box that can be targeted specifically with tetR-fusion proteins.

Diffraction of partially-coherent light beams by microlens arrays.

The synthesis method including wave-optics and ray-tracing for the acceleration of the simulation of micro-optical systems has been developed. The effects of the spatial coherence and randomization of microlens array (MLA) parameters have been considered. The method based on coherent states representation for the calculation of the optical efficiency of microlens arrays taking into account the light source polarization has been developed.

Method to Assemble Genomic DNA Fragments or Genes on Human Artificial Chromosome with Regulated Kinetochore Using a Multi-Integrase System.

The production of cells capable of carrying multiple transgenes to Mb-size genomic loci has multiple applications in biomedicine and biotechnology. In order to achieve this goal, three key steps are required: (i) cloning of large genomic segments; (ii) insertion of multiple DNA blocks at a precise location and (iii) the capability to eliminate the assembled region from cells. In this study, we designed the iterative integration system (IIS) that utilizes recombinases Cre, ΦC31 and ΦBT1, and combined it with a human artificial chromosome (HAC) possessing a regulated kinetochore (alphoid-HAC).

Primary cultures of human colon cancer as a model to study cancer stem cells.

The principal cause of death in cancer involves tumor progression and metastasis. Since only a small proportion of the primary tumor cells, cancer stem cells (CSCs), which are the most aggressive, have the capacity to metastasize and display properties of stem cells, it is imperative to characterize the gene expression of diagnostic markers and to evaluate the drug sensitivity in the CSCs themselves. Here, we have examined the key genes that are involved in the progression of colorectal cancer and are expressed in cancer stem cells.

Mitochondrial Genomes of Kinorhyncha: trnM Duplication and New Gene Orders within Animals.

Many features of mitochondrial genomes of animals, such as patterns of gene arrangement, nucleotide content and substitution rate variation are extensively used in evolutionary and phylogenetic studies. Nearly 6,000 mitochondrial genomes of animals have already been sequenced, covering the majority of animal phyla. One of the groups that escaped mitogenome sequencing is phylum Kinorhyncha-an isolated taxon of microscopic worm-like ecdysozoans.

Vector Laguerre-Gauss beams with polarization-orbital angular momentum entanglement in a graded-index medium.

It is shown that the vector-vortex Laguerre-Gauss modes with polarization-orbital angular momentum (OAM) entanglement are the vector solutions of the Maxwell equations in a graded-index medium. Focusing of linearly and circularly polarized vortex light beams with nonzero azimuthal and radial indices in a cylindrical graded-index waveguide is investigated. The wave shape variation with distance taking into account the spin-orbit and nonparaxial effects is analyzed.

Subwavelength diffractive color beam combiner.

A high-efficiency subwavelength diffractive beam combiner operating in a visible spectral range is designed, fabricated, and demonstrated. Such a device combines red, green, and blue color beams into one output light beam. Diffraction efficiencies of different types of gratings are calculated for various materials, incidence angles, and polarizations of light.

Splitting of levels in a cylindrical dielectric waveguide.

A splitting of modes in a cylindrical graded-index optical fiber is demonstrated by solving the full Maxwell equations using the perturbation analysis. It is shown that the degeneracy of vortex Laguerre-Gauss modes with distinct orbital angular momentum and polarization (spin) but the same total angular momentum is lifted due to the spin-orbit (vector) and tensor forces. Numerical estimations of group delays of modes in optical fiber and frequency splitting in Fabry-Perot and ring resonators are presented.

The 1:1 host-guest complexation between cucurbit[7]uril and styryl dye.

The photophysical properties of aqueous solution of styryl dye, 4-[(E)-2-(3,4-dimethoxyphenyl)ethenyl]-1-ethylpyridinium perchlorate (dye 1), in the presence of cucurbit[7]uril (CB[7]) was studied by means of fluorescence spectroscopy methods. The production of 1:1 host-guest complexes in the range of CB[7] concentrations up to 16 μM with K = 1.0 × 10(6) M(-1) has been observed, which corresponds to appearance of the isosbestic point at 396 nm in the absorption spectra and a 5-fold increase in fluorescence intensity.

Advanced dielectric continuum model of preferential solvation.

A continuum model for solvation effects in binary solvent mixtures is formulated in terms of the density functional theory. The presence of two variables, namely, the dimensionless solvent composition y and the dimensionless total solvent density z, is an essential feature of binary systems. Their coupling, hidden in the structure of the local dielectric permittivity function, is postulated at the phenomenological level.

Preferential solvation of spherical ions in binary DMSO/benzene mixtures.

We consider a new qualitative approach for treating theoretically the solvation of single-atomic ionic solutes in binary mixtures of polar and nonpolar aprotic solvents. It is based on the implicit continuum electrostatic model of the solvent mixture involving distance-dependent dielectric permittivity epsilon(R) (where R is the distance from the ion) and local concentrations C(1)(R) and C(2)(R) of the solvent ingredients. For a given R, the condition for local thermodynamic equilibrium provides the transcendental equation for explicitly establishing the permittivity and concentration profiles.

Successful emergency pancreatoduodenectomy in a non-trauma patient.

In the past decades considerable improvements in diagnostic imaging procedures, surgical technique and perioperative intensive care treatment have lead to a significant decrease in perioperative mortality and morbidity after pancreatic resection. This lead to an expansion of the indications for pancreatoduodenectomy. Little data exist in the literature on emergency pancreatoduodenectomy in non-trauma patients.