Publications by authors named "Nikhil Malvankar"

Microbial extracellular electron transfer (EET) drives various globally important environmental phenomena and has biotechnology applications. Diverse prokaryotes have been proposed to perform EET via surface-displayed "nanowires" composed of multi-heme cytochromes. However, the mechanism that enables only a few cytochromes to polymerize into nanowires is unclear.

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Mixed electronic-ionic conductors are crucial for various technologies, including harvesting power from humidity in a durable, self-sustainable, manner unrestricted by location or environment . Biological proteins have been proposed as mixed conductors for 50 years . Recently, pili filaments have been claimed to act as nanowires to generate power .

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Article Synopsis
  • - Borgs are large extrachromosomal elements associated with "Candidatus Methanoperedens" archaea, and researchers used nanopore sequencing to validate and reconstruct genomes, revealing 13 complete and four near-complete genomes that share 40 key genes.
  • - These conserved genes helped identify new Borgs in peatland soil and map their evolutionary relationships, showing two main clades; importantly, Borg genes related to electron transfer and cell surface proteins are more highly expressed than those of the host.
  • - The study also reconstructed the first complete genome of a Methanoperedens thought to host Borgs, revealing unique methylation patterns that may help distinguish their genomes, and suggests that Borgs could exist independently from
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Extracellular electron transfer (EET) via microbial nanowires drives globally-important environmental processes and biotechnological applications for bioenergy, bioremediation, and bioelectronics. Due to highly-redundant and complex EET pathways, it is unclear how microbes wire electrons rapidly (>10s) from the inner-membrane through outer-surface nanowires directly to an external environment despite a crowded periplasm and slow (<10s) electron diffusion among periplasmic cytochromes. Here, we show that Geobacter sulfurreducens periplasmic cytochromes PpcABCDE inject electrons directly into OmcS nanowires by binding transiently with differing efficiencies, with the least-abundant cytochrome (PpcC) showing the highest efficiency.

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Biofilms are matrix-encased microbial communities that increase the environmental fitness and infectivity of many human pathogens including . Biofilm matrix assembly is essential for biofilm formation and function. Known components of the biofilm matrix are the polysaccharide polysaccharide (VPS), matrix proteins RbmA, RbmC, Bap1, and extracellular DNA, but the majority of the protein composition is uncharacterized.

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OmcZ nanowires produced by Geobacter species have high electron conductivity (>30 S cm). Of 111 cytochromes present in G. sulfurreducens, OmcZ is the only known nanowire-forming cytochrome essential for the formation of high-current-density biofilms that require long-distance (>10 µm) extracellular electron transport.

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Article Synopsis
  • Fibroblasts are essential for wound healing, but their functions are impaired in diabetes, affecting their ability to migrate and produce extracellular matrix (ECM).
  • Advanced microscopy techniques showed that diabetic fibroblasts create thicker, less porous ECM, which hinders normal fibroblast migration and leads to slower movement and increased stiffness.
  • Deleting thrombospondin-2 (TSP2) in diabetic fibroblasts improved their functions, suggesting TSP2 plays a critical role in regulating the Rac1-WAVE2-actin pathway and cytoskeleton organization.
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Light-induced microbial electron transfer has potential for efficient production of value-added chemicals, biofuels and biodegradable materials owing to diversified metabolic pathways. However, most microbes lack photoactive proteins and require synthetic photosensitizers that suffer from photocorrosion, photodegradation, cytotoxicity, and generation of photoexcited radicals that are harmful to cells, thus severely limiting the catalytic performance. Therefore, there is a pressing need for biocompatible photoconductive materials for efficient electronic interface between microbes and electrodes.

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Although proteins are considered as nonconductors that transfer electrons only up to 1 to 2 nanometers via tunneling, transports respiratory electrons over micrometers, to insoluble acceptors or syntrophic partner cells, via nanowires composed of polymerized cytochrome OmcS. However, the mechanism enabling this long-range conduction is unclear. Here, we demonstrate that individual nanowires exhibit theoretically predicted hopping conductance, at rate (>10 s) comparable to synthetic molecular wires, with negligible carrier loss over micrometers.

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Hydrocephalus, characterized by cerebral ventricular dilatation, is routinely attributed to primary defects in cerebrospinal fluid (CSF) homeostasis. This fosters CSF shunting as the leading reason for brain surgery in children despite considerable disease heterogeneity. In this study, by integrating human brain transcriptomics with whole-exome sequencing of 483 patients with congenital hydrocephalus (CH), we found convergence of CH risk genes in embryonic neuroepithelial stem cells.

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Advances in synthetic biology permit the genetic encoding of synthetic chemistries at monomeric precision, enabling the synthesis of programmable proteins with tunable properties. Bacterial pili serve as an attractive biomaterial for the development of engineered protein materials due to their ability to self-assemble into mechanically robust filaments. However, most biomaterials lack electronic functionality and atomic structures of putative conductive proteins are not known.

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Every living cell needs to get rid of leftover electrons when metabolism extracts energy through the oxidation of nutrients. Common soil microbes such as Geobacter sulfurreducens live in harsh environments that do not afford the luxury of soluble, ingestible electron acceptors like oxygen. Instead of resorting to fermentation, which requires the export of reduced compounds (e.

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Extracellular electron transfer by Geobacter species through surface appendages known as microbial nanowires is important in a range of globally important environmental phenomena, as well as for applications in bio-remediation, bioenergy, biofuels and bioelectronics. Since 2005, these nanowires have been thought to be type 4 pili composed solely of the PilA-N protein. However, previous structural analyses have demonstrated that, during extracellular electron transfer, cells do not produce pili but rather nanowires made up of the cytochromes OmcS and OmcZ.

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Bacterial biofilms are communities of bacteria that exist as aggregates that can adhere to surfaces or be free-standing. This complex, social mode of cellular organization is fundamental to the physiology of microbes and often exhibits surprising behavior. Bacterial biofilms are more than the sum of their parts: single-cell behavior has a complex relation to collective community behavior, in a manner perhaps cognate to the complex relation between atomic physics and condensed matter physics.

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Proteins are commonly known to transfer electrons over distances limited to a few nanometers. However, many biological processes require electron transport over far longer distances. For example, soil and sediment bacteria transport electrons, over hundreds of micrometers to even centimeters, via putative filamentous proteins rich in aromatic residues.

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Extracellular electron transfer via filamentous protein appendages called 'microbial nanowires' has long been studied in Geobacter and other bacteria because of their crucial role in globally-important environmental processes and their applications for bioenergy, biofuels, and bioelectronics. Thousands of papers thought these nanowires as pili without direct evidence. Here, we summarize recent discoveries that could help resolve two decades of confounding observations.

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Article Synopsis
  • Understanding how water films form on minerals is essential for global processes like element cycling and ice nucleation.
  • Researchers used advanced techniques like infrared nanospectroscopy and atomic force microscopy to study how these films develop, discovering films with up to four layers growing primarily from defects.
  • The findings indicate that factors like surface tension and nanoscale surface features significantly affect how thick and uneven these water films become on hydrophilic mineral nanoparticles.
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Multifunctional living materials are attractive due to their powerful ability to self-repair and replicate. However, most natural materials lack electronic functionality. Here we show that an electric field, applied to electricity-producing Geobacter sulfurreducens biofilms, stimulates production of cytochrome OmcZ nanowires with 1,000-fold higher conductivity (30 S cm) and threefold higher stiffness (1.

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Long-range (>10 μm) transport of electrons along networks of Geobacter sulfurreducens protein filaments, known as microbial nanowires, has been invoked to explain a wide range of globally important redox phenomena. These nanowires were previously thought to be type IV pili composed of PilA protein. Here, we report a 3.

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Unlabelled: The electrically conductive pili (e-pili) of Geobacter sulfurreducens serve as a model for a novel strategy for long-range extracellular electron transfer. e-pili are also a new class of bioelectronic materials. However, the only other Geobacter pili previously studied, which were from G.

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Anaerobic microorganisms play a central role in several environmental processes and regulate global biogeochemical cycling of nutrients and minerals. Many anaerobic microorganisms are important for the production of bioenergy and biofuels. However, the major hurdle in studying anaerobic microorganisms in the laboratory is the requirement for sophisticated and expensive gassing stations and glove boxes to create and maintain the anaerobic environment.

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